PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_02.950
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C3H
Protein Properties Length: 815aa    MW: 90327.6 Da    PI: 5.2558
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_02.950genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.9e-12214238327
                                   S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                   +++C +++++GtCk+G +CkF+H+p
  evm.model.AsparagusV1_02.950 214 EANCAYYMKMGTCKFGLNCKFNHPP 238
                                   579********************96 PP
2zf-CCCH22.32.3e-07297317626
                                   -SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                                   C++++  G CkyG+ Ck++H 
  evm.model.AsparagusV1_02.950 297 CKYYSSPGGCKYGNACKYNHN 317
                                   ********************7 PP
3zf-CCCH29.11.7e-09339363226
                                   -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                   ++++C +++ tG Cky  +C+F+H+
  evm.model.AsparagusV1_02.950 339 GEKECTYYMSTGSCKYSTNCRFHHP 363
                                   7899********************9 PP
4zf-CCCH29.21.6e-09481507127
                                   --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                   +++++C+ff++tGtCk+   CkF+H++
  evm.model.AsparagusV1_02.950 481 PGQPECQFFMKTGTCKFKTACKFHHPK 507
                                   5789*********************96 PP
5zf-CCCH30.18e-10528553227
                                   -S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                   ++++C ++ r  +CkyG +Ck++H++
  evm.model.AsparagusV1_02.950 528 DQPICTHYNRHRICKYGLSCKYNHPM 553
                                   689*********************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    
MAACDAGPVG LGLVLNPPSP VPSSDATDIP ETLNADLHNL DLNTEDDPSS KSDELNNPKI  60
EKDPEERSDE LGNPKVGEDP EEKSDGADQE PTAREENGNS ANENSEPSSE ENLVETAVDG  120
WGSDPGVTVP EENQKPDEVM ADGWGWDQDF NLSNGNQNPE KDIEWSNGEK VEVFGWGPET  180
GVTEKNYKPG VGFENTKEEK GQRRKPQFPV RSNEANCAYY MKMGTCKFGL NCKFNHPPNK  240
MKNRAKVRKM PEGIQLKDAG LKENGASSEN VGKTDYEKTH NEKKGGTFPD SNGQISCKYY  300
SSPGGCKYGN ACKYNHNEKN EFPAPPAALN FLGLPMRPGE KECTYYMSTG SCKYSTNCRF  360
HHPDPTAVGG QDPSSGYQNG TLPQPHAPPA QPPMTSWPAQ QNPNDQVPYT PPPYVTGFYL  420
PPQGLHPNPE WNSYPAPARP LFTPEMNMPH PPSAATMRDT MHKGNGSAPK HAPDAEYPER  480
PGQPECQFFM KTGTCKFKTA CKFHHPKSRL PKTSGVNVSP VGLPLRPDQP ICTHYNRHRI  540
CKYGLSCKYN HPMDFNPSVA PAAVPASSRK VSPVPGIEPQ EVRTEGNTNS NQESEWWIQD  600
SRDQFTKERL EAINDEFKLY RCHCVAACPK GLNPAKQIEA TKRLQLHFGI IMKLLFPCSY  660
SLLPIGEEFT FKSAVAENLS EGEIVDVISL KKAWWVFSIV AVFNSLRQRE KVRQFGYMNT  720
FTLSYGVPGI GLNDDGLMPL HIDYALDKML QYARXXXXRE RVMEIYSNHG IDGVQLVADV  780
NEVESQPNQS DVTNSQREQA TDHANAQDEI APMQ*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.24e-75C3H family protein