PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_02.674

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 337aa MW: 38704.7 Da PI: 8.423

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_02.674	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	105	124	4	23
TTTTEEESSHHHHHHHHHHT CS zf-C2H2 4 pdCgksFsrksnLkrHirtH 23 p Cgk F ++s LkrH +H evm.model.AsparagusV1_02.674 105 PGCGKKFGDSSKLKRHHLVH 124 58**************9988 PP
2	zf-C2H2	22.1	4e-07	130	154	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+Cp Cg+ F+ + nL++H+++H evm.model.AsparagusV1_02.674 130 YVCPheGCGRAFNLSFNLRTHMKLH 154 99*********************99 PP
3	zf-C2H2	19.7	2.3e-06	160	185	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp dCgk++++ + Lk+Hi+ H evm.model.AsparagusV1_02.674 160 HVCPyqDCGKRYTQEYKLKNHIKGrH 185 79********************9877 PP
4	zf-C2H2	20.2	1.5e-06	219	244	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp dCgk + +k+ L+ H+r+ H evm.model.AsparagusV1_02.674 219 YVCPyeDCGKNYIHKYKLNLHLRNqH 244 9**********************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MGDQSNHRPF VRRSVVGEQR PAVRWVKDWV PQDISATGKR IFLLKWVKED TLKSLKESFK 60 EPEPEEPKPE PATEILFLCR YKSCNKAYIN EAQYRKHAHV HGKNPGCGKK FGDSSKLKRH 120 HLVHTGVKDY VCPHEGCGRA FNLSFNLRTH MKLHSQEHCH VCPYQDCGKR YTQEYKLKNH 180 IKGRHEKAAT VDMINHSVTA DKLQRTVKAR AVHGAHRPYV CPYEDCGKNY IHKYKLNLHL 240 RNQHPGHNRE DVYPAKGGVA KNSKSNKPDL LPEMSPSKLQ QKGSPSPPMS VDDSEKRWPN 300 HVIYEHSEET EEELENIAGD DDEETEDEEC GLIHCI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	4e-91	C2H2 family protein