PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_02.587

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C3H

Protein Properties

Length: 701aa MW: 82351.3 Da PI: 8.9612

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_02.587	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.6e-07	188	207	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H evm.model.AsparagusV1_02.587 188 CPFHLKTGACRFGTRCSRVH 207 ******************99 PP
2	zf-CCCH	27.3	6.4e-09	317	344	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C f+++ C++G+ C+F+H+ evm.model.AsparagusV1_02.587 317 WKVAICGEFMKSRlrNCSRGSACNFIHC 344 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MADPVTADEQ PKPTVNETLG GLQSRKEKRK ALKKLKRKQI RKEAAIRERE EEEARSNDPE 60 EEERIRKAEE EERRRQKLLE ESERRKGEHS NELDEDDEWD YIEDGPAEII WKGNEIIVKK 120 KMAKIPKGSA DRKQDDKDVE RPTSNPLPPQ SVAYASYNNR QHTSAPDLLE SVAQQVPNFG 180 TEQDKAHCPF HLKTGACRFG TRCSRVHFYP DKSCTILIKN MYNGPGLAWE QDEGLEHTNE 240 EIEHCYEEFY EDVHTEFLKF GELVNFKVCR NGSSHLRGNV YVHYRFLESA VLAYNTMNAR 300 YFAGKQITCE FVGVTRWKVA ICGEFMKSRL RNCSRGSACN FIHCFRNPGG DYEWADWDNP 360 PPKYWIRKMG VLFGNSDELS YGKQMEFGDF ESPRDSSRKR APITGRYHSR RSPGDEIEVH 420 DYGSDRENSY RKRDRSSSRS VRREHSERRK DESKQHEENH KSKVHHYDTK NSPHAANVDR 480 YREKDREYDK KHQKFESHQR QKGEDSSVRK EKSERKHRSK SNKREREEDI SSHQLSVYND 540 DRRNRSSSHS SGEYLRHSID VQDQDDARYC SNDSDSERNF SDQDRPHRNK QHKSRHRRHT 600 TNYDEKAKLM KYEAYDDRWE TRGEASGREE TEESSYNGSS SSHRKPSKSG GKLKHCRKKR 660 RHVDNSSGSD EELDRKPRKK HSHGQRTSAE KRSQQRSHNS *

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MADPVTADEQ PKPTVNETLG GLQSRKEKRK ALKKLKRKQI RKEAAIRERE EEEARSNDPE  60
EEERIRKAEE EERRRQKLLE ESERRKGEHS NELDEDDEWD YIEDGPAEII WKGNEIIVKK  120
KMAKIPKGSA DRKQDDKDVE RPTSNPLPPQ SVAYASYNNR QHTSAPDLLE SVAQQVPNFG  180
TEQDKAHCPF HLKTGACRFG TRCSRVHFYP DKSCTILIKN MYNGPGLAWE QDEGLEHTNE  240
EIEHCYEEFY EDVHTEFLKF GELVNFKVCR NGSSHLRGNV YVHYRFLESA VLAYNTMNAR  300
YFAGKQITCE FVGVTRWKVA ICGEFMKSRL RNCSRGSACN FIHCFRNPGG DYEWADWDNP  360
PPKYWIRKMG VLFGNSDELS YGKQMEFGDF ESPRDSSRKR APITGRYHSR RSPGDEIEVH  420
DYGSDRENSY RKRDRSSSRS VRREHSERRK DESKQHEENH KSKVHHYDTK NSPHAANVDR  480
YREKDREYDK KHQKFESHQR QKGEDSSVRK EKSERKHRSK SNKREREEDI SSHQLSVYND  540
DRRNRSSSHS SGEYLRHSID VQDQDDARYC SNDSDSERNF SDQDRPHRNK QHKSRHRRHT  600
TNYDEKAKLM KYEAYDDRWE TRGEASGREE TEESSYNGSS SSHRKPSKSG GKLKHCRKKR  660
RHVDNSSGSD EELDRKPRKK HSHGQRTSAE KRSQQRSHNS *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	658	680	KKRRHVDNSSGSDEELDRKPRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-149	C3H family protein