PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_02.2174

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB

Protein Properties

Length: 423aa MW: 47334.4 Da PI: 9.7315

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_02.2174	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	9.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT eEde+l ++++ +G g+W++ ++ g+ R++k+c++rw +yl evm.model.AsparagusV1_02.2174 14 KGRWTSEEDEILSKYIASHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	54.8	2.2e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE+e +v++++ lG++ W+ Ia +++ gRt++++k++w+++l evm.model.AsparagusV1_02.2174 67 RGNITQEEEETIVKLHASLGNR-WSVIAGHLP-GRTDNEIKNYWNSHL 112 7999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MGRAPCCEKV GLKKGRWTSE EDEILSKYIA SHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI TQEEEETIVK LHASLGNRWS VIAGHLPGRT DNEIKNYWNS HLSRKITIFD 120 SCMHLKDVSC RLYELVMVMA ERGDSRASFR APLFHNGGQG LKPREETREL RFERPFSTMA 180 AKGSSQVPRR IVPVPCEALK NSYISSFTKR IPTAVQLVKL YSTTDTQNSL EFPRDEIDVV 240 SVLKASLPNT VEADDEFDEL GPSVSGGSDS NSVLAKNPKS VRAKKKALAA RCITVKNSQL 300 LIRNLHNSSD YISRISIRIA NISKKMTEVA IHSICMSYGD VIALARSKEG AIDVMFRVLG 360 CSCFTAHSEV VRASKSKEKV SDICNDVLPN LRRKYLIYAK IIVRNNILGN DMGNCSNYFM 420 HE*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MGRAPCCEKV GLKKGRWTSE EDEILSKYIA SHGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI TQEEEETIVK LHASLGNRWS VIAGHLPGRT DNEIKNYWNS HLSRKITIFD  120
SCMHLKDVSC RLYELVMVMA ERGDSRASFR APLFHNGGQG LKPREETREL RFERPFSTMA  180
AKGSSQVPRR IVPVPCEALK NSYISSFTKR IPTAVQLVKL YSTTDTQNSL EFPRDEIDVV  240
SVLKASLPNT VEADDEFDEL GPSVSGGSDS NSVLAKNPKS VRAKKKALAA RCITVKNSQL  300
LIRNLHNSSD YISRISIRIA NISKKMTEVA IHSICMSYGD VIALARSKEG AIDVMFRVLG  360
CSCFTAHSEV VRASKSKEKV SDICNDVLPN LRRKYLIYAK IIVRNNILGN DMGNCSNYFM  420
HE*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	3e-71	MYB family protein