PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.AsparagusV1_02.2106 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 166aa MW: 18757.6 Da PI: 10.2929 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.2 | 3.3e-06 | 49 | 71 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H evm.model.AsparagusV1_02.2106 49 FVCEICNKGFQRDQNLQLHRRGH 71 89*******************88 PP | |||||||
2 | zf-C2H2 | 16.6 | 2.3e-05 | 125 | 147 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ evm.model.AsparagusV1_02.2106 125 WKCEKCSKKYAVQSDWKAHVKTC 147 58*******************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 166 aa Download sequence |
MSNITGDGES FSXXXXPPVK KKRNLPGTPD PTAEVIALSP TTLMATNRFV CEICNKGFQR 60 DQNLQLHRRG HNLPWKLRQR TTSEVRKRAY ICPEPGCVHH NPARALGDLT GIKKHFCRKH 120 GEKKWKCEKC SKKYAVQSDW KAHVKTCGTR EYKCDCGTIF SRSGL* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G03840.1 | 3e-85 | C2H2 family protein |