PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_02.2105
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C3H
Protein Properties Length: 666aa    MW: 71342 Da    PI: 7.2108
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_02.2105genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.19.8e-113661126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                                   ++++ C +++rtG C +G+rC+F+H+
  evm.model.AsparagusV1_02.2105 36 PGEPDCGYYLRTGLCGFGERCRFNHP 61
                                   5789*********************8 PP
2zf-CCCH38.32.3e-1281107127
                                    --S---SGGGGTS--TTTTT-SS-SSS CS
                        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                    ++++ C++f++tGtCkyG++Ck+ H++
  evm.model.AsparagusV1_02.2105  81 PGQPACQYFLKTGTCKYGASCKYDHPR 107
                                    57899********************96 PP
3zf-CCCH382.8e-12129153327
                                    S---SGGGGTS--TTTTT-SS-SSS CS
                        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                    +++C++++rtG+Ck+G++CkF+H++
  evm.model.AsparagusV1_02.2105 129 EKECSYYLRTGQCKFGSTCKFHHPE 153
                                    689********************96 PP
4zf-CCCH38.91.5e-12275301127
                                    --S---SGGGGTS--TTTTT-SS-SSS CS
                        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                    +++++C++++rtG Ck+G++Ck++H+p
  evm.model.AsparagusV1_02.2105 275 PGQPECQYYMRTGDCKFGATCKYHHPP 301
                                    5789*********************97 PP
5zf-CCCH30.85.1e-10324347427
                                    ---SGGGGTS--TTTTT-SS-SSS CS
                        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                     +C f+a+ G Ck+G++CkF H++
  evm.model.AsparagusV1_02.2105 324 QPCAFYAQHGVCKFGPTCKFDHPM 347
                                    69********************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    
MESDEAGGNA WARNGRGDVA AAIGSSCDPP LYPERPGEPD CGYYLRTGLC GFGERCRFNH  60
PCDRSVTGGG RVSGGEYPER PGQPACQYFL KTGTCKYGAS CKYDHPRQGV ESAYPVSLNI  120
YGYPLRLGEK ECSYYLRTGQ CKFGSTCKFH HPEPAGVQVP SPAPAFYPTV QATTVSGWQV  180
GRPTMLPSQY MQAPYGSMVF SSGVVPVPGW SPYPPTVSPA LPLGGQQGIQ TGSVFGSSNQ  240
LSPSAPAIPG PFAALSPSIG PSSSGQKEQA FPERPGQPEC QYYMRTGDCK FGATCKYHHP  300
PEWRIPRTDC ALSPVGLPVR PGAQPCAFYA QHGVCKFGPT CKFDHPMGML SYSPSASSLA  360
DMPVAPYPVG YSLATLAPLS SSSDLRPEFN SFPSRIPSTE TTPSGSIGSM FSKGGRFYRK  420
VARKRSAFDP LSPSSSSSSR PSAASPTPHV NPLVRSASRS SVDAGIEAQA RGSLTIEEPT  480
SSTPSALSSS PSRPSAASTP PEVNRSAHSA AESSVDAGIE AQALGYRTIK EPTSSTPSAS  540
SSSPSRPSAA SPPGGDNSAG QALLGNRAEK EAERQEREME RDERERDRQD ICGDNVGGGD  600
HNSEDHALLG NMTVREVERQ ERERERDERE KDKQERREVE REGMGGWRGL KERAERENER  660
VEQRE*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.11e-142C3H family protein