PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.AsparagusV1_02.1537 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 141aa MW: 15261.8 Da PI: 5.7239 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 115.5 | 6.7e-36 | 12 | 123 | 262 | 374 |
GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341 yysalfdsl+a+++++s+er+ vE++ll+rei+nv+a g +r+ + + +++Wre+l+++GF+ v+l +aa+qa lll evm.model.AsparagusV1_02.1537 12 XYYSALFDSLSASYSEDSNERHIVEQQLLSREIRNVLAVGGPARTGEIK-FGNWREKLSQSGFRGVSLAGNAAAQATLLL 90 69*****************************************998887.****************************** PP GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++sdgy++ ee+g+l lgWkd L+++SaW+ evm.model.AsparagusV1_02.1537 91 GMFPSDGYTLVEENGTLKLGWKDLCLLTASAWK 123 ********************************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 141 aa Download sequence |
MVEQDLTQSG SXYYSALFDS LSASYSEDSN ERHIVEQQLL SREIRNVLAV GGPARTGEIK 60 FGNWREKLSQ SGFRGVSLAG NAAAQATLLL GMFPSDGYTL VEENGTLKLG WKDLCLLTAS 120 AWKPVHTSSA AYLTTSSQKY * |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54220.1 | 2e-65 | GRAS family protein |