PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_02.1322
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GATA
Protein Properties Length: 623aa    MW: 70092.3 Da    PI: 10.5231
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_02.1322genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.3e-1331117297
                                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                             B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                    fk++     +k+  l +p k a+++g     ++t++l+d++++sW+vkl  +  +gr  + +GW +Fv ++ ++ g f+v
  evm.model.AsparagusV1_02.1322  31 FKIM--LGDFKH-VLHIPLKLAKAIGCL--DKQTVILRDSNSQSWRVKL--SMVDGRLAFCEGWDDFVLDHSINHGQFIV 103
                                    5666..555555.599*********644..3459***************..9999999999******************* PP

                                    EEE-SSSEE..EEEEE CS
                             B3  82 Fkldgrsefelvvkvf 97 
                                    Fk+++  +f ++v++f
  evm.model.AsparagusV1_02.1322 104 FKFIE--KFVFRVRIF 117
                                    **876..676688887 PP
2GATA48.98.7e-16585619135
                           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                    C+ C ++kTplWR gp g+ktLCnaCGl++ + +l
  evm.model.AsparagusV1_02.1322 585 CTKCLSSKTPLWRPGPLGPKTLCNACGLRFNSGRL 619
                                    ******************************98875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    
MAHQNKGRRR AMERRSTEFL KTHDQIPSSF FKIMLGDFKH VLHIPLKLAK AIGCLDKQTV  60
ILRDSNSQSW RVKLSMVDGR LAFCEGWDDF VLDHSINHGQ FIVFKFIEKF VFRVRIFGVN  120
ACEIIEFDEI RDERSAGTKT KTTGKTFEVS GLRSRIDNRN PVKKARKEKA STCNLEVPKT  180
IQKSSEHAGN IYSNAVNEKR NGNSTGIKRK TAEKTFDVSG PGRKIDNRYS AKKARKESTT  240
SNLKALKTSE KGSENVGNIH SNAISPVVNE KRNEKSTGAK RKMAEKTFKG LGLGSKIENH  300
PSLKKVIKEK TPTSNLKVQK TIEKSSEHVN NAVSHVVITE SSGNHWAAIT IPVPLSELPC  360
DIVKKLRDDE TNVMFSSEKS CSWVEDVIAL KMVTRKFLLT ENGVCHIVDE NTEKTLIDLT  420
ECEGRDYRFR SLKIGKKSQG KGTTISDKRI QDYHNRSHDM QRYYLRSGFA NSKPKCTTYQ  480
TPSPMEAQQV SPKPTEAEKD PISVTSKART KIKEINPNQN ISLHSSDRPS LLPQAYWLSD  540
RELIFPKKGT ENKISRSRSP QLKLEEQGVK AQVQAQVKNQ GPKRCTKCLS SKTPLWRPGP  600
LGPKTLCNAC GLRFNSGRLL PV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.18e-16GATA family protein