PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.529

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

CO-like

Protein Properties

Length: 412aa MW: 45433.1 Da PI: 5.1939

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.529	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.2	2.6e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ + e++ +C+++ lC +C + H+ H++ evm.model.AsparagusV1_01.529 4 LCDFCAEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHSR 44 6*****************************65677777766 PP
2	zf-B_box	18.9	3.3e-06	46	89	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+++ +++ + C + ++ lC++C ++H++ H++++ evm.model.AsparagusV1_01.529 46 LLCDRCFSQPSIVRCIEENVSLCHNCDWNGHRDsasaseHKRQT 89 57*****************************7799999999876 PP
3	CCT	65.8	1.2e-22	354	397	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a++RYkeK+ktRkF+KkirY+sRKa+A+ R RvKGrFvk+ evm.model.AsparagusV1_01.529 354 RDSAVMRYKEKKKTRKFDKKIRYASRKARADVRRRVKGRFVKAG 397 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MGALCDFCAE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHSRTLLCDR CFSQPSIVRC 60 IEENVSLCHN CDWNGHRDSA SASEHKRQTI NCYSGCPSAA ELSRIWSFVR EFPSEDDSNC 120 EQGMGLMSIN ENWASTCWGE PGSNSNQDVI MNQMDTMDKF NPWIGSYSAS SANALQNRAQ 180 QADPMQSTAP KLCGSGTKEV EIRKSDFNED FQVDDVDLTL EDYEELFGGS HNYSGQLFDD 240 AGIDSFFDLK ETSGANSNCQ GDIPEESSAG CIKSRQQACS NGADPLPSNP GSKADPSASF 300 PARQAHSSLS LSFSGLTGES SAGDYPEMSS MLLMGEPPWY PTGHECSSFP AANRDSAVMR 360 YKEKKKTRKF DKKIRYASRK ARADVRRRVK GRFVKAGEAY DYDPLCQTRS Y*

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MGALCDFCAE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHSRTLLCDR CFSQPSIVRC  60
IEENVSLCHN CDWNGHRDSA SASEHKRQTI NCYSGCPSAA ELSRIWSFVR EFPSEDDSNC  120
EQGMGLMSIN ENWASTCWGE PGSNSNQDVI MNQMDTMDKF NPWIGSYSAS SANALQNRAQ  180
QADPMQSTAP KLCGSGTKEV EIRKSDFNED FQVDDVDLTL EDYEELFGGS HNYSGQLFDD  240
AGIDSFFDLK ETSGANSNCQ GDIPEESSAG CIKSRQQACS NGADPLPSNP GSKADPSASF  300
PARQAHSSLS LSFSGLTGES SAGDYPEMSS MLLMGEPPWY PTGHECSSFP AANRDSAVMR  360
YKEKKKTRKF DKKIRYASRK ARADVRRRVK GRFVKAGEAY DYDPLCQTRS Y*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	3e-93	CO-like family protein