PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.3344
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C3H
Protein Properties Length: 373aa    MW: 39053.2 Da    PI: 9.7906
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.3344genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.55.5e-09108132226
                                    -S---SGGGGTS--TTTTT-SS-SS CS
                        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                    kt+ C+ +     Ck+Gd+C+FaHg
  evm.model.AsparagusV1_01.3344 108 KTKMCNKYNTAEGCKFGDKCNFAHG 132
                                    899*********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    
MDFGAARKRG RPDSANGNGG FAGIKRAKEV DAQSGLGSKS KPCTKFFSMV GCPFGEGCHF  60
QHYVPGGYAV VSQMTNMGNA AAQAPSFRVP IAPPPIPDTH APPPSNLKTK MCNKYNTAEG  120
CKFGDKCNFA HGDRELGKPI VPSHNSPVAL PTPVSAGRMM AHVERPQPPA ATPAPGSFSA  180
SATAKISVDA SLFGAIIGKG GANTKHISRA TGVKLAIRDH ESDAKLKNIE LEGSIDQISK  240
ANALVQELLL NISATASVPA KTPVAALLLL PLLLVLRVIS RPSSVRTSQR APARLATDAI  300
LLTVLASCGK QLFEFALSEI CFVYLISGCR VLSNLSALAV GSDYHGTRTF TGDLDRLCAV  360
LIIHFLAFVV SL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-29C3H family protein