PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_01.1830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | C3H | ||||||||
Protein Properties | Length: 145aa MW: 15573.1 Da PI: 6.4994 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.5 | 1.1e-08 | 99 | 124 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f++ GtC+y +C+FaHg+ evm.model.AsparagusV1_01.1830 99 FKTKLCCKFRA-GTCPYITNCNFAHGM 124 69*********.*************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence |
MDYGGRYSGS NAIEIIPEAS STGGSNAWMP PSNDQSIWAT EDDYQVWNAE PSSDSISNFS 60 QSRAGSEQPP SKKSRGSSQN DAQLNGSTSK SKAIGKMFFK TKLCCKFRAG TCPYITNCNF 120 AHGMEELRPP PPNWQEIVAA HGGT* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 9e-43 | C3H family protein |