PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_01.162 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | C3H | ||||||||
Protein Properties | Length: 433aa MW: 47387.7 Da PI: 6.8894 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.8 | 5.1e-10 | 50 | 73 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +++rtG C yG++C+++H+ evm.model.AsparagusV1_01.162 50 APDCIYYLRTGLCGYGGNCRYNHP 73 589********************8 PP | |||||||
2 | zf-CCCH | 37.6 | 3.6e-12 | 92 | 116 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++tGtCk+G++Ck++H++ evm.model.AsparagusV1_01.162 92 QPDCQYFLKTGTCKFGATCKYHHPQ 116 789********************97 PP | |||||||
3 | zf-CCCH | 32.2 | 1.8e-10 | 138 | 161 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H+p evm.model.AsparagusV1_01.162 138 KSCPYYMRTGSCKFGFACKFNHPP 161 66********************97 PP | |||||||
4 | zf-CCCH | 40.2 | 5.6e-13 | 277 | 302 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+CkyG++Ck++H++ evm.model.AsparagusV1_01.162 277 DQPECQHYMKTGICKYGETCKYHHPK 302 689*********************96 PP | |||||||
5 | zf-CCCH | 30.6 | 5.8e-10 | 324 | 346 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C f++ +G C+yG+ CkF H+ evm.model.AsparagusV1_01.162 324 GICTFYSVYGSCRYGSACKFDHP 346 58********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence |
MQDHSEFQSN AVSSSSNASP ENLEDAIWKL KLEENNQVGN QNPYPDRPGA PDCIYYLRTG 60 LCGYGGNCRY NHPNYNGQGT QDRGELPERV GQPDCQYFLK TGTCKFGATC KYHHPQERYD 120 LQPAPLNILG LPMRQDEKSC PYYMRTGSCK FGFACKFNHP PPATLGPVFS VGPSAYGSTG 180 PYVAPPSSLP FIGGLSAWPS ARPYLPSSRM QDLPAYMPVF LPSSQGTIPV QQGWATYMGH 240 ASQIPSTEVL GPTQVSNTNL HAQSSSSTVI NLPERPDQPE CQHYMKTGIC KYGETCKYHH 300 PKERYLESSI TLGPSGLPLR PGHGICTFYS VYGSCRYGSA CKFDHPVMGS YDYAMPAHFP 360 SSQSNLPLQV TWASTPEAPS SKTSKLTDQI KKSSEKNNVE ENVASDNQNE HVTVPPSTNT 420 EASSDSSQIH SN* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-92 | C3H family protein |