PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028557216.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family FAR1
Protein Properties Length: 277aa    MW: 32298.2 Da    PI: 6.3989
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028557216.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1736.5e-2353140290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      Y++Y ++vGFsvrk+++ +  ++++i ++ fvCsk g+++  + +  k++ ++a+trtgC a+++ + ++dg+w+v+k++++HnHela
  XP_028557216.1  53 IYCRYTHSVGFSVRKDHHCYWPNSRKIQMKGFVCSKAGFKKGLDLN-AKSKYRKANTRTGCPAMIRFSVDQDGEWKVNKCVENHNHELA 140
                     7*****************************************9999.8999999*********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MDTVPEEMNG WSEMEGFTQE SQLRGGDGLQ QNTQPNFDIL SVVCNSEKEA YDIYCRYTHS  60
VGFSVRKDHH CYWPNSRKIQ MKGFVCSKAG FKKGLDLNAK SKYRKANTRT GCPAMIRFSV  120
DQDGEWKVNK CVENHNHELA RPEDQHLLRS CRKITEERAF VLKSMTDAGI RTIDAFTYLA  180
DEVGGREHVG FLRRDAYNFV QRNRRCKIET GDTNSLIEIF KNRANSDNMF VWEVQYDEED  240
RLMNFFWDDG VGRIDYDCFG DVIIFDTSYR LNKYNLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-33FAR1 family protein