PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028556768.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 458aa MW: 50415.3 Da PI: 6.7241

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028556768.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.3e-09	303	351	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_028556768.1 303 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 351 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MRSWSEAKLS FREERKMDLG EKGKFGLEKR TVDSLNCNTT GLTTTEWNQI GSLPCPSASM 60 VDSFGHVIWN QLPSNTHNLS FSNAQATASS STIGKPVPMN WNPSDSLTKG GMFFSTGMGM 120 LPLSLSQFPC DAGFTERAAR FSCFSDVAYP FIVPGSSDAT AEAQMQKNEA DRIEALKGRS 180 GLIDQSSNSG SPMKEQREKG PNEFSEPEFS DDARDESPNS SKGVFGINKR KRSNQDMESD 240 QGQAAAQLPF EAAKDVTDNK QKEEKNSSTM ANVKPLGKNP KESGEAPKED YIHVRARRGQ 300 ATNSHSLAER VRREKISERM KFLQDLVPGC SKVTGKAVML DEIINYVQSL QRQVELFQTR 360 TGSSSVIGFT PEMIHQQLHP PHQGLIQVGM AGVMNPSDAF RRALNVQLAS TSGFKDSTQQ 420 MTNAWDEDLH NVVQMTYGNN PPLKTQDLNG APRDGFPL

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MRSWSEAKLS FREERKMDLG EKGKFGLEKR TVDSLNCNTT GLTTTEWNQI GSLPCPSASM  60
VDSFGHVIWN QLPSNTHNLS FSNAQATASS STIGKPVPMN WNPSDSLTKG GMFFSTGMGM  120
LPLSLSQFPC DAGFTERAAR FSCFSDVAYP FIVPGSSDAT AEAQMQKNEA DRIEALKGRS  180
GLIDQSSNSG SPMKEQREKG PNEFSEPEFS DDARDESPNS SKGVFGINKR KRSNQDMESD  240
QGQAAAQLPF EAAKDVTDNK QKEEKNSSTM ANVKPLGKNP KESGEAPKED YIHVRARRGQ  300
ATNSHSLAER VRREKISERM KFLQDLVPGC SKVTGKAVML DEIINYVQSL QRQVELFQTR  360
TGSSSVIGFT PEMIHQQLHP PHQGLIQVGM AGVMNPSDAF RRALNVQLAS TSGFKDSTQQ  420
MTNAWDEDLH NVVQMTYGNN PPLKTQDLNG APRDGFPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	9e-75	bHLH family protein