PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028556164.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 1192aa MW: 135241 Da PI: 7.0309

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028556164.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.9	3.7e-09	82	111	61	90
FAR1 61 gCkaklkvkkekdgkwevtkleleHnHela 90 Cka+++v ++++gkw ++kle+eHnH+l+ XP_028556164.1 82 RCKAMMEVVLKENGKWSISKLETEHNHSLN 111 7**************************996 PP
2	FAR1	75.4	1.2e-23	417	503	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA +vGF vrk k+ r+ + r +vCskeg+r ++ + + ++ r+etrtgC a++ +k++++gk+ v+++++eHnH+la XP_028556164.1 417 EFYLRYAGNVGFCVRKGWWDKTARSV-TRLRVYVCSKEGFRPKSFAN--EMKKARPETRTGCPARMAIKLMSNGKYSVSEFVSEHNHDLA 503 6***************99995554.88899*****999888..9999*********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1192 aa Download sequence
MFRISEPSEV PSSNQEKVEE DVEMEVKDEE ALARAEEALV GQPPDEQALR VAQIVRSYLH 60 MKQTAEGGEG GCGDAESPSG DRCKAMMEVV LKENGKWSIS KLETEHNHSL NAASSGDGST 120 KVALTIGMVF DSVEEAKAFY YGYGEKIGFR ARTGSNRRSV GKGALIMQRF LCWRGSYPLQ 180 RRNLETSTGK RKRGPYKKRS KLLDEFEEKK DGDGDVVEVV DIDSSAEKIG MADADFGVYV 240 ESRPSVKGSV GGDCAAEIES RALVKSTASS ETTKAPASEM KNGGQPPATS VSAQSKLLRE 300 LGVRVYRYSS DEKRDIILRY LMKKNNRQSG ERTIKFFTTQ PPPGENFLQQ QNIQQQQNIP 360 QQQDAGGKFI GWVPLQTYEM QDKVVARKPK PLIREITGVV EEPKIGMLFA NEDRAYEFYL 420 RYAGNVGFCV RKGWWDKTAR SVTRLRVYVC SKEGFRPKSF ANEMKKARPE TRTGCPARMA 480 IKLMSNGKYS VSEFVSEHNH DLAAPLDIQM FKSQKLLTKM QFGNHHRTKL IPSEYKNYLR 540 LKRARSMPMG DAGAMLTYLQ RMKSENPSFF YAIQVDEDDQ LTNIFWADTN SIMDYDYFGD 600 VVCFNTTYKD ADSGRPFVLF TGVNHHKQTV IFGAAVMYAE TVESFKWLFE TFKAVMGGKQ 660 PKTILTGQSS AISDAIAVVW PSVVHRYCIW HIYQSVAKNL TQDFKDLENF LLDFNQCIFE 720 FQEEEDFLTA WTSLLERYGL KDNEWLANLY EERKKWALPY GQETFYADIF NTLRRDGLNS 780 VLKEYLSPEI DLLQFLNKYE EFVKERRYME QEADYLSSQC VSRATTLRFL WQAANVYTHA 840 AFEMFKMEFD LLSNCIVYGC GDVGTVSEYE GTVSEYEVAV KDKSKLYFVR FDISDGSVFC 900 SCKKFEFVGI QCCHVLRVLD CRNVKELAPQ YFLKRWSKDV KSGLIRDNEG FTLQDDPKSS 960 LQKRYSSLCR ILYRIAARAA QNVHAYAFME NQSNQILEQV EQILQTKLLE KTSMNNFSKG 1020 QSQSQIQGEG IDNENNGESR RSSGKKKNDA TVRRRQQNGM DMSKQYKGLT GKSDAVEVSM 1080 DANDPLMASN EIPSQTRNSS NQIFPPSQSF QLQGPYIPGH QFGLGSFHGF HGTPQFTQEF 1140 SAPVLQQQSF PGETHLGQAS EMHALQFVAS NSQLGPQGGD QGHYTIPVWD FL

Sequence ? help Back to Top

Protein Sequence Length: 1192 aa Download sequence

MFRISEPSEV PSSNQEKVEE DVEMEVKDEE ALARAEEALV GQPPDEQALR VAQIVRSYLH  60
MKQTAEGGEG GCGDAESPSG DRCKAMMEVV LKENGKWSIS KLETEHNHSL NAASSGDGST  120
KVALTIGMVF DSVEEAKAFY YGYGEKIGFR ARTGSNRRSV GKGALIMQRF LCWRGSYPLQ  180
RRNLETSTGK RKRGPYKKRS KLLDEFEEKK DGDGDVVEVV DIDSSAEKIG MADADFGVYV  240
ESRPSVKGSV GGDCAAEIES RALVKSTASS ETTKAPASEM KNGGQPPATS VSAQSKLLRE  300
LGVRVYRYSS DEKRDIILRY LMKKNNRQSG ERTIKFFTTQ PPPGENFLQQ QNIQQQQNIP  360
QQQDAGGKFI GWVPLQTYEM QDKVVARKPK PLIREITGVV EEPKIGMLFA NEDRAYEFYL  420
RYAGNVGFCV RKGWWDKTAR SVTRLRVYVC SKEGFRPKSF ANEMKKARPE TRTGCPARMA  480
IKLMSNGKYS VSEFVSEHNH DLAAPLDIQM FKSQKLLTKM QFGNHHRTKL IPSEYKNYLR  540
LKRARSMPMG DAGAMLTYLQ RMKSENPSFF YAIQVDEDDQ LTNIFWADTN SIMDYDYFGD  600
VVCFNTTYKD ADSGRPFVLF TGVNHHKQTV IFGAAVMYAE TVESFKWLFE TFKAVMGGKQ  660
PKTILTGQSS AISDAIAVVW PSVVHRYCIW HIYQSVAKNL TQDFKDLENF LLDFNQCIFE  720
FQEEEDFLTA WTSLLERYGL KDNEWLANLY EERKKWALPY GQETFYADIF NTLRRDGLNS  780
VLKEYLSPEI DLLQFLNKYE EFVKERRYME QEADYLSSQC VSRATTLRFL WQAANVYTHA  840
AFEMFKMEFD LLSNCIVYGC GDVGTVSEYE GTVSEYEVAV KDKSKLYFVR FDISDGSVFC  900
SCKKFEFVGI QCCHVLRVLD CRNVKELAPQ YFLKRWSKDV KSGLIRDNEG FTLQDDPKSS  960
LQKRYSSLCR ILYRIAARAA QNVHAYAFME NQSNQILEQV EQILQTKLLE KTSMNNFSKG  1020
QSQSQIQGEG IDNENNGESR RSSGKKKNDA TVRRRQQNGM DMSKQYKGLT GKSDAVEVSM  1080
DANDPLMASN EIPSQTRNSS NQIFPPSQSF QLQGPYIPGH QFGLGSFHGF HGTPQFTQEF  1140
SAPVLQQQSF PGETHLGQAS EMHALQFVAS NSQLGPQGGD QGHYTIPVWD FL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-108	FAR1 family protein