PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028556136.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 709aa MW: 79272.9 Da PI: 6.5097

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028556136.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	4e-06	110	134	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 +C+ a++G C++G++C+F+H+ XP_028556136.1 110 ICSEVAKSGkadGCRFGENCRFNHD 134 5999999999999***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence
MDIIPLAESN ETASPDDGFD PLEKPYQSPP KLPVELRTPE DLIAKAIAPV KIDYLRPPPS 60 RTALTAKVEG GADNDATEWK TTTSGVIKEK KSKRQLKRER KQEQKSALHI CSEVAKSGKA 120 DGCRFGENCR FNHDIAAFLA QKPADLEGVC PFVTFEELCP YGITCRFFNT HKEHTPESCD 180 ISKKSSEINV LKKDLQKLLW KNKFSFPMAD YQLKVLGLKG GKSTNSKAGN GQLDNNPENS 240 DVLNDLHADE VDDTCISADE IRRSPCEAAE KELSSVVSGF DESRPLKKVK SLVDGHVKDN 300 WSSEATYGTS EQRNDLPETN LLDGRDGASS IRLCSSISDL NLKPHAREKK LIDFSRKLYL 360 APLTTVGNLP FRRICKTLGA DITCGEMALC TNLLQGQASE WALLRRHSSE DIFGVQICGA 420 YPDSVARTVE LIDQHCEVDF IDINMGCPID IIVNKGAGSS LLTKPMRMKS IIQAASGTTV 480 VPLTIKVRTG FFEGRNRIDS LISNIYDWGA GAITVHGRSR QQRYSKLSDW NYIYQCTNKA 540 PADLQVLGNG DIFSYCDYNK HMSDCPELST CMIARGALIK PWIFTEIKEQ RHWDISSSER 600 LNIIRDFVNF GLEHWGSDTK GVETTRHFLL EWLSYTHRYI PVGILDVIPQ RLNWRPPSYF 660 GRDDLETLMA SDSAADWIRI SEMLLGKVPE SFTFAPKHKS NAYDTAENG

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence

MDIIPLAESN ETASPDDGFD PLEKPYQSPP KLPVELRTPE DLIAKAIAPV KIDYLRPPPS  60
RTALTAKVEG GADNDATEWK TTTSGVIKEK KSKRQLKRER KQEQKSALHI CSEVAKSGKA  120
DGCRFGENCR FNHDIAAFLA QKPADLEGVC PFVTFEELCP YGITCRFFNT HKEHTPESCD  180
ISKKSSEINV LKKDLQKLLW KNKFSFPMAD YQLKVLGLKG GKSTNSKAGN GQLDNNPENS  240
DVLNDLHADE VDDTCISADE IRRSPCEAAE KELSSVVSGF DESRPLKKVK SLVDGHVKDN  300
WSSEATYGTS EQRNDLPETN LLDGRDGASS IRLCSSISDL NLKPHAREKK LIDFSRKLYL  360
APLTTVGNLP FRRICKTLGA DITCGEMALC TNLLQGQASE WALLRRHSSE DIFGVQICGA  420
YPDSVARTVE LIDQHCEVDF IDINMGCPID IIVNKGAGSS LLTKPMRMKS IIQAASGTTV  480
VPLTIKVRTG FFEGRNRIDS LISNIYDWGA GAITVHGRSR QQRYSKLSDW NYIYQCTNKA  540
PADLQVLGNG DIFSYCDYNK HMSDCPELST CMIARGALIK PWIFTEIKEQ RHWDISSSER  600
LNIIRDFVNF GLEHWGSDTK GVETTRHFLL EWLSYTHRYI PVGILDVIPQ RLNWRPPSYF  660
GRDDLETLMA SDSAADWIRI SEMLLGKVPE SFTFAPKHKS NAYDTAENG