PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028555918.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 413aa MW: 46194.6 Da PI: 8.1614

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028555918.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.1	3.9e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerFveav+qLGG+e AtPkt+l+lm+++gLtl+h+kSHLQkYRl XP_028555918.1 45 KPRLKWTPELHERFVEAVNQLGGPETATPKTVLRLMGIPGLTLYHLKSHLQKYRL 99 79****************************************************8 PP
2	Myb_DNA-binding	69	7.7e-22	47	98	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r++WT+e++e++v+av+qlGg+ t+kt+ r mg g+tl+++ks++qky+ XP_028555918.1 47 RLKWTPELHERFVEAVNQLGGPetaTPKTVLRLMGiPGLTLYHLKSHLQKYR 98 89*************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MYHHLDHNNS KLISSRKSFP LERNLFLQTG NGPGDAGLTL STDVKPRLKW TPELHERFVE 60 AVNQLGGPET ATPKTVLRLM GIPGLTLYHL KSHLQKYRLS KNLQAQTNGG TENYVEIPTS 120 ALNRTSSEGS GSFVHNINVG PFSKKTMQIN QALQKQMEVQ RRIDDQFEMQ RHLQRQIEAQ 180 GRYLQSVLEK AQETLGKENL GSAGLETARI QPKILNECFT SAFPGLEETD GSHNLQGNAA 240 QITYCSMESC LTTSERSKKD QQMHNTNMVM GAYHGNLSLG AQEMQEGARL AQIQSGLCAD 300 LTSHRLFSQS RENDSTHCTL PVSRSSSILS MSKKNKKDTT EGSNISEAHR RQRDEHNSYL 360 EQAGYKGNEI QQISLRNSTL FELPSATTQL DLNTCDKYSA SKNSNKFDLN DFS

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MYHHLDHNNS KLISSRKSFP LERNLFLQTG NGPGDAGLTL STDVKPRLKW TPELHERFVE  60
AVNQLGGPET ATPKTVLRLM GIPGLTLYHL KSHLQKYRLS KNLQAQTNGG TENYVEIPTS  120
ALNRTSSEGS GSFVHNINVG PFSKKTMQIN QALQKQMEVQ RRIDDQFEMQ RHLQRQIEAQ  180
GRYLQSVLEK AQETLGKENL GSAGLETARI QPKILNECFT SAFPGLEETD GSHNLQGNAA  240
QITYCSMESC LTTSERSKKD QQMHNTNMVM GAYHGNLSLG AQEMQEGARL AQIQSGLCAD  300
LTSHRLFSQS RENDSTHCTL PVSRSSSILS MSKKNKKDTT EGSNISEAHR RQRDEHNSYL  360
EQAGYKGNEI QQISLRNSTL FELPSATTQL DLNTCDKYSA SKNSNKFDLN DFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	2e-87	G2-like family protein