PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028555867.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 790aa MW: 90898.8 Da PI: 7.9747

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028555867.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.6	3.2e-16	29	111	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA +vGF v ++ks+ + + g + + +vC+k gk +e+ ++r++ +t+C+a+++vk++ dg ++++ + eHnH+ XP_028555867.1 29 SFYKLYALRVGFGVAVKKSSFT-TYGLCRRLVLVCTKGGKGRENACY-----QSRPTAKTDCRAMIVVKLWGDGLLHLMEAHVEHNHPT 111 5**************99998.7888************9999.....99*******************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 790 aa Download sequence
MAMDDKVVAM DGRTPQVGMV FKSYEEVVSF YKLYALRVGF GVAVKKSSFT TYGLCRRLVL 60 VCTKGGKGRE NACYQSRPTA KTDCRAMIVV KLWGDGLLHL MEAHVEHNHP TNPSSARFLK 120 CYKKMSCRMT NMIARASGHE GISLDDRESL NFMDGGRLKL EEGDNEAIHQ FFARMQAKNP 180 NFFYLMDLDT EGRLRNVFWA DARSRASYQH FGDVISFDTS CLKYKFNIPL VLFLGTNHHG 240 QSILLGCGFV AEQIVENYTW LLKTWLTCMN GSVPNAVITD ESEMIKEAIS DVFPKARHRI 300 CLWRMMKSVK EKLKEYAEHK TIKRALNRVV FESCQVDEFE EKWSELIKGF GLKGDDLFNS 360 LYELRSFWIP AFLKDTFWAG MSITHYKERI NSFFEGYLYL ETCLKEFLSK YEVSLQSKYE 420 TEAQADYESL YNAGIFVSKY HMEEQLSKLY SLNIFKVFQD ELKGGLYCQV SLIKVDASSS 480 TYKVRECAFI NEIEKAENKD YDVLYIVDGF QVHCSCGFFQ FRGILCRHAL SVLKLQQVYD 540 IPARYIIDRW RKDFKQLNLI SRKLKDGLNN SNSMERYDNL SMRCLSLVDI GVMSDEKYQL 600 ALKLIREVEK SLLDDNLFRD LQRKLLPFDN RLSESDENHA SHEYGMYEES KNSPALPMKR 660 RGRPPKKVKE TSLETLPSSS KRKDNLGTSL IDNQNSFLQA SPNASQLGAQ IRIPGGVNLE 720 EVNPNELSFG NHYGIHATPP DIMSNHSTLQ SANALQNQFG QQNLGNQQAV QWFYQPFFQE 780 DQSPFGRRPG

Sequence ? help Back to Top

Protein Sequence Length: 790 aa Download sequence

MAMDDKVVAM DGRTPQVGMV FKSYEEVVSF YKLYALRVGF GVAVKKSSFT TYGLCRRLVL  60
VCTKGGKGRE NACYQSRPTA KTDCRAMIVV KLWGDGLLHL MEAHVEHNHP TNPSSARFLK  120
CYKKMSCRMT NMIARASGHE GISLDDRESL NFMDGGRLKL EEGDNEAIHQ FFARMQAKNP  180
NFFYLMDLDT EGRLRNVFWA DARSRASYQH FGDVISFDTS CLKYKFNIPL VLFLGTNHHG  240
QSILLGCGFV AEQIVENYTW LLKTWLTCMN GSVPNAVITD ESEMIKEAIS DVFPKARHRI  300
CLWRMMKSVK EKLKEYAEHK TIKRALNRVV FESCQVDEFE EKWSELIKGF GLKGDDLFNS  360
LYELRSFWIP AFLKDTFWAG MSITHYKERI NSFFEGYLYL ETCLKEFLSK YEVSLQSKYE  420
TEAQADYESL YNAGIFVSKY HMEEQLSKLY SLNIFKVFQD ELKGGLYCQV SLIKVDASSS  480
TYKVRECAFI NEIEKAENKD YDVLYIVDGF QVHCSCGFFQ FRGILCRHAL SVLKLQQVYD  540
IPARYIIDRW RKDFKQLNLI SRKLKDGLNN SNSMERYDNL SMRCLSLVDI GVMSDEKYQL  600
ALKLIREVEK SLLDDNLFRD LQRKLLPFDN RLSESDENHA SHEYGMYEES KNSPALPMKR  660
RGRPPKKVKE TSLETLPSSS KRKDNLGTSL IDNQNSFLQA SPNASQLGAQ IRIPGGVNLE  720
EVNPNELSFG NHYGIHATPP DIMSNHSTLQ SANALQNQFG QQNLGNQQAV QWFYQPFFQE  780
DQSPFGRRPG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-133	FAR1 family protein