PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028555168.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 496aa MW: 55746.2 Da PI: 9.0202

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028555168.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.9	2.3e-08	382	430	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E ++lv++v ++G g+W+ I + +Rt ++k++w+++l XP_028555168.1 382 AWTLGEVLKLVEGVSRYGAGRWSQIRQVAFasgSHRTSVDLKDKWRNLL 430 7**********************99998999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MVDGDGRLIP ATDDELIEVK HFVEEDGIIS GTRQSENEVD TKKVMFKMDV DGPSFGQPNI 60 SDTLAKNQST EACSEIRKNA VNEAAEGSFS KKFSSLKPDF SLLEGEICLD NFSIRELQEA 120 FRATFGRYTS VKDKLWLKRR IAMGLTNSCN IPSANFIIKD NKIVLCNVQE ETTSRTQRNM 180 SYPGYIMMNN STDPLNETLQ RTLNDTSSGI VEQKASFTKA LDKSLEKCNV ENLNTQMEQC 240 GAKRIRRPTK RYIEEHTEVE VMAYSGRVAS LGKTAMHDQH CLKSKVRTPC LVDTSQDLLG 300 GYDARIPSVL RVRRRPPRKN FLTLVNFVHT EREKMNPEVL NSEQSPHQKH EKFISSVGAA 360 FHEKSDTVHP VEASVKRKHH RAWTLGEVLK LVEGVSRYGA GRWSQIRQVA FASGSHRTSV 420 DLKDKWRNLL KASFAQVPTD KGIGNSRKPA SLPIPTPILL RVRELADKRS DSEIEFGSSQ 480 FVGHGGIVQE KETGFL

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MVDGDGRLIP ATDDELIEVK HFVEEDGIIS GTRQSENEVD TKKVMFKMDV DGPSFGQPNI  60
SDTLAKNQST EACSEIRKNA VNEAAEGSFS KKFSSLKPDF SLLEGEICLD NFSIRELQEA  120
FRATFGRYTS VKDKLWLKRR IAMGLTNSCN IPSANFIIKD NKIVLCNVQE ETTSRTQRNM  180
SYPGYIMMNN STDPLNETLQ RTLNDTSSGI VEQKASFTKA LDKSLEKCNV ENLNTQMEQC  240
GAKRIRRPTK RYIEEHTEVE VMAYSGRVAS LGKTAMHDQH CLKSKVRTPC LVDTSQDLLG  300
GYDARIPSVL RVRRRPPRKN FLTLVNFVHT EREKMNPEVL NSEQSPHQKH EKFISSVGAA  360
FHEKSDTVHP VEASVKRKHH RAWTLGEVLK LVEGVSRYGA GRWSQIRQVA FASGSHRTSV  420
DLKDKWRNLL KASFAQVPTD KGIGNSRKPA SLPIPTPILL RVRELADKRS DSEIEFGSSQ  480
FVGHGGIVQE KETGFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17460.1	1e-55	MYB_related family protein