PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028554970.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 364aa    MW: 40613.2 Da    PI: 4.9639
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028554970.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.8e-13161203754
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     + Er+RR ++N++f+ Lr+l+P++      K++ a+++  A++YIk+L
  XP_028554970.1 161 ATERQRRVQLNEKFAALRSLVPNP-----SKPDRASTVGDAIDYIKEL 203
                     78*********************9.....7****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    
ADLGLDHINN QLSFDVEVAS LPPPSFELSN WDICYSDQLA PPLSLPQPLY PDPNYFPGGP  60
SVPDLLNMLE LPRCAVNPPT TSSISFDGIS MLYEPMIGAR NSMGTENYGL LPQNYGLFCG  120
LEEREGGMMG SGEGERRKFD GVLDCRRELM AKGDQMKGSF ATERQRRVQL NEKFAALRSL  180
VPNPSKPDRA STVGDAIDYI KELLRTIDDL KLLVEKKQLG RERSKQIIRT EETTACTDME  240
SSTIIRSAKE DNQENLPAIN GPLRSSWIQR KSKETFVDVR IIDDEVNIKL TQKKKMNTLL  300
FVSKALDELQ LDLNHVAGGN IGDYHIFMFN AKICEGSTVY AGAVANKLLD AMARRTAHDS  360
IFYL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.22e-72bHLH family protein