PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028553044.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 667aa MW: 76364.3 Da PI: 8.6455

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028553044.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.5	1.9e-27	94	180	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA ++GFsvrk k+ ++++ +rt+vCs+eg+r+e+k ++++r+r+etr+gC a++k+k++ +g++++tk+ eHnH+ XP_028553044.1 94 EFYNNYAGMAGFSVRKGWLDKRVSDKTTRSRTLVCSREGFRQERKAG-NEAKRPRPETRIGCLARMKIKLMPSGRYRITKFIAEHNHQ 180 6*****************************************999.9************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence
MITNNLRPAE MKGQRTFVGV FIVELVLGPR RICAVAQRGR GLYAMHVALH GESMMIQKTL 60 KKVTYLDASG EDAFGADMVP KLGMEFENEN KAYEFYNNYA GMAGFSVRKG WLDKRVSDKT 120 TRSRTLVCSR EGFRQERKAG NEAKRPRPET RIGCLARMKI KLMPSGRYRI TKFIAEHNHQ 180 PAPPSSKHLL RSQRVTSEFQ STDADLSDDA VAALRSSGEP TITRPDVYIL PSDYNACLRS 240 KRMKSMQSGD AEALLKYLQS MQLQNTAFFY AIQLDEDDKL TNIFWADSKS LEDFNYFGDV 300 VCLDTTYKFN GHCRPFVLFL GVNHHKQITL FGAAFLYDET VESFKWLLNT FGIAMHGKLP 360 KTILTDESVA ISSALATVWP ETMHRLCVWQ IYHSSMKHLS HVFQSSKTFA KDFSRCIYSS 420 EDEDQLVLGW RSLLEKYDLR SNEWISKLFE CRENWALAYG RQTFCADIKS TLQNESLSSE 480 LKKYLTPQHD LPSFFKNYEK VVSECRYAEL QADFHASQSF PRIPPSKMLR QAASMYTPAV 540 FEMFRKEFDV FMDCMLYNSG EYGRVTEYRI TVGDNAKEYY VRLDSTDFSV ACSCKKFEFT 600 GIHCGHVIKV LDVRNIKELP FRYYLKRWKR DAKLAIDAEP KSPTVSLASG QVPPDPHQGC 660 QLGQATG

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence

MITNNLRPAE MKGQRTFVGV FIVELVLGPR RICAVAQRGR GLYAMHVALH GESMMIQKTL  60
KKVTYLDASG EDAFGADMVP KLGMEFENEN KAYEFYNNYA GMAGFSVRKG WLDKRVSDKT  120
TRSRTLVCSR EGFRQERKAG NEAKRPRPET RIGCLARMKI KLMPSGRYRI TKFIAEHNHQ  180
PAPPSSKHLL RSQRVTSEFQ STDADLSDDA VAALRSSGEP TITRPDVYIL PSDYNACLRS  240
KRMKSMQSGD AEALLKYLQS MQLQNTAFFY AIQLDEDDKL TNIFWADSKS LEDFNYFGDV  300
VCLDTTYKFN GHCRPFVLFL GVNHHKQITL FGAAFLYDET VESFKWLLNT FGIAMHGKLP  360
KTILTDESVA ISSALATVWP ETMHRLCVWQ IYHSSMKHLS HVFQSSKTFA KDFSRCIYSS  420
EDEDQLVLGW RSLLEKYDLR SNEWISKLFE CRENWALAYG RQTFCADIKS TLQNESLSSE  480
LKKYLTPQHD LPSFFKNYEK VVSECRYAEL QADFHASQSF PRIPPSKMLR QAASMYTPAV  540
FEMFRKEFDV FMDCMLYNSG EYGRVTEYRI TVGDNAKEYY VRLDSTDFSV ACSCKKFEFT  600
GIHCGHVIKV LDVRNIKELP FRYYLKRWKR DAKLAIDAEP KSPTVSLASG QVPPDPHQGC  660
QLGQATG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	148	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-122	FAR1 family protein