PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028552894.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 405aa MW: 45137.7 Da PI: 5.7543

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028552894.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.3	1.7e-33	42	96	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerF+eav+qLGG++kAtPkt++++m+++gLtl+h+kSHLQkYRl XP_028552894.1 42 KPRLKWTPELHERFIEAVNQLGGADKATPKTVMRIMGIPGLTLYHLKSHLQKYRL 96 79****************************************************8 PP
2	Myb_DNA-binding	66.5	4.8e-21	44	95	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r++WT+e++e++++av+qlGg t+kt++r mg g+tl+++ks++qky+ XP_028552894.1 44 RLKWTPELHERFIEAVNQLGGAdkaTPKTVMRIMGiPGLTLYHLKSHLQKYR 95 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MHRLGQSDIL SSRPTFPPEK TLLLQGRNAL GDSGLVLSTD AKPRLKWTPE LHERFIEAVN 60 QLGGADKATP KTVMRIMGIP GLTLYHLKSH LQKYRLSKNL QVQTNCGGVM IGSAALLDRR 120 TEASGSTESQ PEVASQTNKS MKISESLMIQ VEVQRQLNEQ LEVQRQLQLR IEAQGKYLQS 180 VLEKTEETLG KQNFTSMGPE DAKFQLSEHV SNAFNKCLPT EFPGFKETAH LPRQHAHTTH 240 VYDGSTGSCL TSNEDIGKDD VGMFFRTYHS DLFVQNNKSC DIAMFEETPT ARCGEVNHKE 300 LVHSSLPSEV DAIFMIEGGS ALFSLNTTHG LNENNSIADA SRKETEIEYP YLGIQNSKTL 360 EILQGIEKQS SQFGFSSRIT QLDLNINDNN EDLEGCKQFD LNGFN

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MHRLGQSDIL SSRPTFPPEK TLLLQGRNAL GDSGLVLSTD AKPRLKWTPE LHERFIEAVN  60
QLGGADKATP KTVMRIMGIP GLTLYHLKSH LQKYRLSKNL QVQTNCGGVM IGSAALLDRR  120
TEASGSTESQ PEVASQTNKS MKISESLMIQ VEVQRQLNEQ LEVQRQLQLR IEAQGKYLQS  180
VLEKTEETLG KQNFTSMGPE DAKFQLSEHV SNAFNKCLPT EFPGFKETAH LPRQHAHTTH  240
VYDGSTGSCL TSNEDIGKDD VGMFFRTYHS DLFVQNNKSC DIAMFEETPT ARCGEVNHKE  300
LVHSSLPSEV DAIFMIEGGS ALFSLNTTHG LNENNSIADA SRKETEIEYP YLGIQNSKTL  360
EILQGIEKQS SQFGFSSRIT QLDLNINDNN EDLEGCKQFD LNGFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-71	G2-like family protein