PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028552864.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 493aa MW: 57932.6 Da PI: 7.7582

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028552864.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.2	5.1e-22	53	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA++vGFsvrk+++ + ++++i +++fvCsk g+++ + + k++ ++++trtgC +++ ++dg+w+v+k++++HnHela XP_028552864.1 53 IYCRYARSVGFSVRKDHHCYWPNSRKIHMKDFVCSKAGFKKGLDLN-AKSKYRKSNTRTGCPVMIRFLVDHDGEWKVNKCVENHNHELA 140 7***************************************9999.88899999******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MDTVPEEMND WSEMEDFTQE SQLRGGDGLQ QNTQPNFDIL SVVCNSEKEA YDIYCRYARS 60 VGFSVRKDHH CYWPNSRKIH MKDFVCSKAG FKKGLDLNAK SKYRKSNTRT GCPVMIRFLV 120 DHDGEWKVNK CVENHNHELA RPEDQHLLRS CRNITKERAF VLKSMTDAGI RTIDAFTYLA 180 DEVGGREYVG FLRRDAYNFV QRNKRCKIET RDTNSLIEIF KNQANSDTMF VWEVQYDEED 240 RLMNFFWADG VGRIDYDCFG DVIIFYTRYR LNKYKLACAP FVGVNNHWQN ILLGVAFLSE 300 ETEESFTWLF RTFLRVMGGK HPITIFTDQD QAMSRAIEIA FPQTRHRLCQ WHITKKLPSK 360 LHCYNSNNKV RGLIYKYFSK CDSEEEFEST WTEMLNEGDL HSHEWLKELY KIRHKWSTAY 420 NKTCFNLGIL STQRSESTNN VCHGISKPTS TITECFLGLE KVMKTWRRNE KDEDFKCSQS 480 DVVPLVKSSP ILR

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MDTVPEEMND WSEMEDFTQE SQLRGGDGLQ QNTQPNFDIL SVVCNSEKEA YDIYCRYARS  60
VGFSVRKDHH CYWPNSRKIH MKDFVCSKAG FKKGLDLNAK SKYRKSNTRT GCPVMIRFLV  120
DHDGEWKVNK CVENHNHELA RPEDQHLLRS CRNITKERAF VLKSMTDAGI RTIDAFTYLA  180
DEVGGREYVG FLRRDAYNFV QRNKRCKIET RDTNSLIEIF KNQANSDTMF VWEVQYDEED  240
RLMNFFWADG VGRIDYDCFG DVIIFYTRYR LNKYKLACAP FVGVNNHWQN ILLGVAFLSE  300
ETEESFTWLF RTFLRVMGGK HPITIFTDQD QAMSRAIEIA FPQTRHRLCQ WHITKKLPSK  360
LHCYNSNNKV RGLIYKYFSK CDSEEEFEST WTEMLNEGDL HSHEWLKELY KIRHKWSTAY  420
NKTCFNLGIL STQRSESTNN VCHGISKPTS TITECFLGLE KVMKTWRRNE KDEDFKCSQS  480
DVVPLVKSSP ILR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-79	FAR1 family protein