PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028552780.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 662aa MW: 74521.3 Da PI: 4.2937

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028552780.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.4	0.00059	498	536	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ sk s e Le+Av ++ Lq XP_028552780.1 498 RQLIQDRIRELRELIPNG----SKQCSIDELLERAVAHMMFLQ 536 67799************7....577888899999999999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence
METFTGISQL LRNLCHGSVW SYAILWKLQE TTQMLLAGED AYASSIKSRV TMEYAPRTGF 60 YSSDPVVTTF GCETNARIED IPAFSIDVVI SNISRYCYFL GEGIVGITAS SEKHKWISLW 120 ELNSRLLLEY PEEMQLQAAA GIKTILLVPV LPFGVVQLGS FFELSEDFKM VAQIKDLFLS 180 SQYTLEVQSI FSLEADGDIA LDRPMIQKYS ACLATATESI DPSNFKPVDM QDWTNLNCDE 240 TTGEELLPQL MVQPNDQLPQ VGLGADSSEE IIWDEMYNEL LSNFSIERAM INSSINTGSA 300 LVGDQSILSY RDEETEMIPV IGNWLAPDDL NHIEESYLAF GEESDGIFLN YPGEEIQLSS 360 PAEFQSQSEV NELTNPSSFL QVQVPKPVEE PAAIMKDNRA DNLPDDKHFE SSGYRTSSIT 420 QCKDGDLLCS EVSIPGIMPS AFSNTEGFTS HLMNVQNSST NIPSSNDDQQ DTIEQELHKK 480 SSKQGKKRGC GGSRPRDRQL IQDRIRELRE LIPNGSKQCS IDELLERAVA HMMFLQSVPV 540 HAEKLNKSKR NKVGTYSNIY EKSLPQNESS LVGELITKRN NLPVIVENLE QPDQMLIEMQ 600 CRDYGLFLDT MQAFKRLKLT IVEGTLQSML TEQWAHFIVQ VPIGFNRIDI LWPLMQLLQF 660 KF

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence

METFTGISQL LRNLCHGSVW SYAILWKLQE TTQMLLAGED AYASSIKSRV TMEYAPRTGF  60
YSSDPVVTTF GCETNARIED IPAFSIDVVI SNISRYCYFL GEGIVGITAS SEKHKWISLW  120
ELNSRLLLEY PEEMQLQAAA GIKTILLVPV LPFGVVQLGS FFELSEDFKM VAQIKDLFLS  180
SQYTLEVQSI FSLEADGDIA LDRPMIQKYS ACLATATESI DPSNFKPVDM QDWTNLNCDE  240
TTGEELLPQL MVQPNDQLPQ VGLGADSSEE IIWDEMYNEL LSNFSIERAM INSSINTGSA  300
LVGDQSILSY RDEETEMIPV IGNWLAPDDL NHIEESYLAF GEESDGIFLN YPGEEIQLSS  360
PAEFQSQSEV NELTNPSSFL QVQVPKPVEE PAAIMKDNRA DNLPDDKHFE SSGYRTSSIT  420
QCKDGDLLCS EVSIPGIMPS AFSNTEGFTS HLMNVQNSST NIPSSNDDQQ DTIEQELHKK  480
SSKQGKKRGC GGSRPRDRQL IQDRIRELRE LIPNGSKQCS IDELLERAVA HMMFLQSVPV  540
HAEKLNKSKR NKVGTYSNIY EKSLPQNESS LVGELITKRN NLPVIVENLE QPDQMLIEMQ  600
CRDYGLFLDT MQAFKRLKLT IVEGTLQSML TEQWAHFIVQ VPIGFNRIDI LWPLMQLLQF  660
KF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	3e-35	bHLH family protein