PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028552737.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 284aa    MW: 32239.9 Da    PI: 6.2422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028552737.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-09127174455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                     +h+ +Er RR+ri +++  L++l+P +     +K   Ka +L + ++Y+ sLq
  XP_028552737.1 127 SHSLAERARRERISKRMKILQDLVPGC-----GKvTGKALVLDQIINYVESLQ 174
                     8**************************.....6669****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MELFSNDQSQ LFFIPDSPSY IPFNFHGEPE DLSNELCFLS YDHRQESILP SSPSSLTETF  60
SSSKVKSEES HRKKRTRNNV NCLTTAHSKN KSTRTKKSNF EKMEMEEKKP PAEYIHVRAR  120
RGQATDSHSL AERARRERIS KRMKILQDLV PGCGKVTGKA LVLDQIINYV ESLQNQVEFL  180
SMKLASVDPV LYELGLNFDD FTSTKENLDS NDPQLLSSMV HSSQYQSTGD NIAVMVSSSS  240
TALYGQRPAQ FPQDSESFYM HVGGQTEALD HQVDPYSIFS FQQN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-45bHLH family protein