PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028552585.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 576aa MW: 65547.9 Da PI: 9.3118

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028552585.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.2	1.2e-27	67	156	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY eYA+++GF+vr+s+ +skr+++i++r++vC +eg+r+ ++ + +++++r+r+ tr+gC+a+++vkk+++gkw ++k+e+ HnH l XP_028552585.1 67 SFYYEYASQMGFKVRVSSFVRSKRDKTIISRQLVCFREGFRSAKDGNsQVRTKRPRMITRVGCRAMIMVKKQSSGKWIISKCENIHNHLL 156 5**************************************9998876889999********************************87 PP
2	FAR1	94.1	1.7e-29	226	313	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY+eYA+++GF+ r+s+ ++skr+++i++r vCskeg+r+++++++e++ r+ra tr+gCka+++vkk+ + +w+v+kl+++HnH l XP_028552585.1 226 FYKEYARRAGFRARISTYYRSKRDNSIISRLIVCSKEGFRSKKDDNAEERLRPRAITRVGCKAMIMVKKRGSRNWVVSKLVKQHNHLL 313 ********************************************9*************************************88 PP
3	FAR1	90.2	2.8e-28	363	452	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+Y+k++GF++r+s+ ++skr+++i++r fvCskeg++ ++++ + ++rr+++ tr+gCka+l vkk++ gkw+v+k+e+eHnH+l XP_028552585.1 363 QFYNAYSKRMGFNMRVSTYYRSKRDKSIISRLFVCSKEGFHLKKDTIsEGSSRRSKEATRVGCKAMLLVKKSNYGKWVVSKCENEHNHPL 452 6*************************************998887646789999*******************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MSGPARGYGK AMERFAFSNP MIISPGDMDE MIESSVPRNT FTSAGAAEPI VEPYEGMKFE 60 SEDAARSFYY EYASQMGFKV RVSSFVRSKR DKTIISRQLV CFREGFRSAK DGNSQVRTKR 120 PRMITRVGCR AMIMVKKQSS GKWIISKCEN IHNHLLGTLG KVVILDFDPY GRANEALESQ 180 TWRETNVHRD VASDPHELVV VPSEMDPHLE PHEGMEFESE QAAQTFYKEY ARRAGFRARI 240 STYYRSKRDN SIISRLIVCS KEGFRSKKDD NAEERLRPRA ITRVGCKAMI MVKKRGSRNW 300 VVSKLVKQHN HLLIARHVED DDGSDVEGDE TIESEEGLPS QSGDVIAEPH GGMEFESEEG 360 ARQFYNAYSK RMGFNMRVST YYRSKRDKSI ISRLFVCSKE GFHLKKDTIS EGSSRRSKEA 420 TRVGCKAMLL VKKSNYGKWV VSKCENEHNH PLGSLRKMHK LRKRKHLCGT SKKHEDQLEN 480 YQNSYESATS QYNILCHEAS KYAESGVTST DLYNVAIHTL QQAVKKVSSI KSLEVSKSGT 540 VIIGDDVDDT SYQDSHVETS ASYDFESARR LNFSDR

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MSGPARGYGK AMERFAFSNP MIISPGDMDE MIESSVPRNT FTSAGAAEPI VEPYEGMKFE  60
SEDAARSFYY EYASQMGFKV RVSSFVRSKR DKTIISRQLV CFREGFRSAK DGNSQVRTKR  120
PRMITRVGCR AMIMVKKQSS GKWIISKCEN IHNHLLGTLG KVVILDFDPY GRANEALESQ  180
TWRETNVHRD VASDPHELVV VPSEMDPHLE PHEGMEFESE QAAQTFYKEY ARRAGFRARI  240
STYYRSKRDN SIISRLIVCS KEGFRSKKDD NAEERLRPRA ITRVGCKAMI MVKKRGSRNW  300
VVSKLVKQHN HLLIARHVED DDGSDVEGDE TIESEEGLPS QSGDVIAEPH GGMEFESEEG  360
ARQFYNAYSK RMGFNMRVST YYRSKRDKSI ISRLFVCSKE GFHLKKDTIS EGSSRRSKEA  420
TRVGCKAMLL VKKSNYGKWV VSKCENEHNH PLGSLRKMHK LRKRKHLCGT SKKHEDQLEN  480
YQNSYESATS QYNILCHEAS KYAESGVTST DLYNVAIHTL QQAVKKVSSI KSLEVSKSGT  540
VIIGDDVDDT SYQDSHVETS ASYDFESARR LNFSDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	4e-40	FAR1 family protein