PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028552376.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 614aa MW: 71485.8 Da PI: 7.732

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028552376.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.3	1.1e-17	11	95	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eY+++ GF v++++s + +g++ ++++ C k+g ++++++ + +++t+t+C a+++v+++kd+ vt+++leHnH l+p XP_028552376.1 11 RFYKEYGHRKGFGVVIKRSWFR--KGKCRRADLSCWKSGCGSTSQQS----SLAKPTTKTNCLAMITVRNWKDDLLFVTDVVLEHNHLLSP 95 5***************9998..889**********998877....8999******************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence
MVFESYDDVF RFYKEYGHRK GFGVVIKRSW FRKGKCRRAD LSCWKSGCGS TSQQSSLAKP 60 TTKTNCLAMI TVRNWKDDLL FVTDVVLEHN HLLSPSKARY FRCNRKLQAV MGKRSDCNDE 120 AGIYVSDNPL LQQNGGPLGI TIGQKECLTY AHKEGTLELK EGDAMAICEY FLQMQRKNPN 180 FFYLLDWDEE SHLRNLFWAD AKSRSSYDYF GDIVAFDTKS LISKYDLPFV SFVGVNHHGQ 240 LVLFGCGLLA SGTSENFVWL FEAWLSCMSG RSPKAIITDQ CMNIQYAVSE VFPESRHRFC 300 LQHILNKMPE KLGHLDKYKP IKKEIKRIIY DSMTISDFED GWKRVIEEFG LEMHKWLQEL 360 YDGRYFWVPA FLKNIFWAGM STTQRNQTLN SYFDEYVDSK TSLQQFISLN EIALQDNYEK 420 EAQADLESFH GSPYLLTQLP IEEKLSKLYT MNMFKKFQEE LKATIQCSIS ILKVDGSVTY 480 YEVRECGFQK KSTEGKIRGF KDFEVSYNAC GSEVECICQR FNFEGILCRH ALSVLKFSQE 540 YDLPSKYILD RWRKDFKRLH PLSHSSDKMV ATNELERYDL LTKRSLQVVE LATSSDSNFH 600 LVMKLLDKIE RSSW

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence

MVFESYDDVF RFYKEYGHRK GFGVVIKRSW FRKGKCRRAD LSCWKSGCGS TSQQSSLAKP  60
TTKTNCLAMI TVRNWKDDLL FVTDVVLEHN HLLSPSKARY FRCNRKLQAV MGKRSDCNDE  120
AGIYVSDNPL LQQNGGPLGI TIGQKECLTY AHKEGTLELK EGDAMAICEY FLQMQRKNPN  180
FFYLLDWDEE SHLRNLFWAD AKSRSSYDYF GDIVAFDTKS LISKYDLPFV SFVGVNHHGQ  240
LVLFGCGLLA SGTSENFVWL FEAWLSCMSG RSPKAIITDQ CMNIQYAVSE VFPESRHRFC  300
LQHILNKMPE KLGHLDKYKP IKKEIKRIIY DSMTISDFED GWKRVIEEFG LEMHKWLQEL  360
YDGRYFWVPA FLKNIFWAGM STTQRNQTLN SYFDEYVDSK TSLQQFISLN EIALQDNYEK  420
EAQADLESFH GSPYLLTQLP IEEKLSKLYT MNMFKKFQEE LKATIQCSIS ILKVDGSVTY  480
YEVRECGFQK KSTEGKIRGF KDFEVSYNAC GSEVECICQR FNFEGILCRH ALSVLKFSQE  540
YDLPSKYILD RWRKDFKRLH PLSHSSDKMV ATNELERYDL LTKRSLQVVE LATSSDSNFH  600
LVMKLLDKIE RSSW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-143	FAR1 family protein