PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028552375.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 662aa MW: 76760.5 Da PI: 7.0363

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028552375.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.1	1.2e-17	59	143	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eY+++ GF v++++s + +g++ ++++ C k+g ++++++ + +++t+t+C a+++v+++kd+ vt+++leHnH l+p XP_028552375.1 59 RFYKEYGHRKGFGVVIKRSWFR--KGKCRRADLSCWKSGCGSTSQQS----SLAKPTTKTNCLAMITVRNWKDDLLFVTDVVLEHNHLLSP 143 5***************9998..889**********998877....8999******************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence
MDDSAKRKQG EDAPYCREVS MLKDLQSAAI ENIPQNGNGE EDQEPKVGMV FESYDDVFRF 60 YKEYGHRKGF GVVIKRSWFR KGKCRRADLS CWKSGCGSTS QQSSLAKPTT KTNCLAMITV 120 RNWKDDLLFV TDVVLEHNHL LSPSKARYFR CNRKLQAVMG KRSDCNDEAG IYVSDNPLLQ 180 QNGGPLGITI GQKECLTYAH KEGTLELKEG DAMAICEYFL QMQRKNPNFF YLLDWDEESH 240 LRNLFWADAK SRSSYDYFGD IVAFDTKSLI SKYDLPFVSF VGVNHHGQLV LFGCGLLASG 300 TSENFVWLFE AWLSCMSGRS PKAIITDQCM NIQYAVSEVF PESRHRFCLQ HILNKMPEKL 360 GHLDKYKPIK KEIKRIIYDS MTISDFEDGW KRVIEEFGLE MHKWLQELYD GRYFWVPAFL 420 KNIFWAGMST TQRNQTLNSY FDEYVDSKTS LQQFISLNEI ALQDNYEKEA QADLESFHGS 480 PYLLTQLPIE EKLSKLYTMN MFKKFQEELK ATIQCSISIL KVDGSVTYYE VRECGFQKKS 540 TEGKIRGFKD FEVSYNACGS EVECICQRFN FEGILCRHAL SVLKFSQEYD LPSKYILDRW 600 RKDFKRLHPL SHSSDKMVAT NELERYDLLT KRSLQVVELA TSSDSNFHLV MKLLDKIERS 660 SW

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence

MDDSAKRKQG EDAPYCREVS MLKDLQSAAI ENIPQNGNGE EDQEPKVGMV FESYDDVFRF  60
YKEYGHRKGF GVVIKRSWFR KGKCRRADLS CWKSGCGSTS QQSSLAKPTT KTNCLAMITV  120
RNWKDDLLFV TDVVLEHNHL LSPSKARYFR CNRKLQAVMG KRSDCNDEAG IYVSDNPLLQ  180
QNGGPLGITI GQKECLTYAH KEGTLELKEG DAMAICEYFL QMQRKNPNFF YLLDWDEESH  240
LRNLFWADAK SRSSYDYFGD IVAFDTKSLI SKYDLPFVSF VGVNHHGQLV LFGCGLLASG  300
TSENFVWLFE AWLSCMSGRS PKAIITDQCM NIQYAVSEVF PESRHRFCLQ HILNKMPEKL  360
GHLDKYKPIK KEIKRIIYDS MTISDFEDGW KRVIEEFGLE MHKWLQELYD GRYFWVPAFL  420
KNIFWAGMST TQRNQTLNSY FDEYVDSKTS LQQFISLNEI ALQDNYEKEA QADLESFHGS  480
PYLLTQLPIE EKLSKLYTMN MFKKFQEELK ATIQCSISIL KVDGSVTYYE VRECGFQKKS  540
TEGKIRGFKD FEVSYNACGS EVECICQRFN FEGILCRHAL SVLKFSQEYD LPSKYILDRW  600
RKDFKRLHPL SHSSDKMVAT NELERYDLLT KRSLQVVELA TSSDSNFHLV MKLLDKIERS  660
SW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-146	FAR1 family protein