PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028552188.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 418aa MW: 46213.3 Da PI: 8.4684

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028552188.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.1	1.3e-15	54	98	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W++I +++g +t q++s+ qk+ XP_028552188.1 54 RERWTAEEHNKFLEALKLHGRA-WRRIEEHIG-SKTTVQIRSHAQKF 98 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MAPSWLYCLF LSKRMCVDGE ASSANCLHPM AEADSSISEH AIKVRKPYII TKQRERWTAE 60 EHNKFLEALK LHGRAWRRIE EHIGSKTTVQ IRSHAQKFFS KVTRESSSNN PSTVKAMEIP 120 PPRPKRKPNH PYPRKLGHLS IMKGPLIDAQ LWPSIANQSV SEQESKSPTS VLSAFGSDTS 180 GTTAADTLKP CMSPVSSVDK TVSVEEILVE QITSAEYKCN KSSDTSPSLT LQDISPMELD 240 LSIQDCFAAK EAPVTGQNIT CLRLFGRTVV VAGLQQQPSS KKNQSEYQEP NMVSFPSLWN 300 LYGVMPFHSS GALNPSDQSP MPSKDESFLH NESSQTDSST TSDSNSEAAE IGIQMKKFPP 360 APVLKPSKNS AFSSLIPYSA NSNRGFVPYK RCVVEKERPR TPVANIEGSS YWEKLGCQ

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MAPSWLYCLF LSKRMCVDGE ASSANCLHPM AEADSSISEH AIKVRKPYII TKQRERWTAE  60
EHNKFLEALK LHGRAWRRIE EHIGSKTTVQ IRSHAQKFFS KVTRESSSNN PSTVKAMEIP  120
PPRPKRKPNH PYPRKLGHLS IMKGPLIDAQ LWPSIANQSV SEQESKSPTS VLSAFGSDTS  180
GTTAADTLKP CMSPVSSVDK TVSVEEILVE QITSAEYKCN KSSDTSPSLT LQDISPMELD  240
LSIQDCFAAK EAPVTGQNIT CLRLFGRTVV VAGLQQQPSS KKNQSEYQEP NMVSFPSLWN  300
LYGVMPFHSS GALNPSDQSP MPSKDESFLH NESSQTDSST TSDSNSEAAE IGIQMKKFPP  360
APVLKPSKNS AFSSLIPYSA NSNRGFVPYK RCVVEKERPR TPVANIEGSS YWEKLGCQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	5e-40	MYB_related family protein