PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028551739.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family E2F/DP
Protein Properties Length: 408aa    MW: 45725 Da    PI: 5.5801
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028551739.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP71.31.1e-22139203170
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 
                     r+++sL llt+kfl+ll ++ +g+++ln++a+eL   dv  ++RR YDi+NVLe+++liek  kn ir k
  XP_028551739.1 139 RYDSSLSLLTKKFLNLLLEAGDGTLDLNKAAQEL---DV--QKRRMYDITNVLEGVGLIEKGLKNMIRLK 203
                     6899******************************...**..************************99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    
MSGIDSSSLA EILPRPPNRQ FKLGSEDFPP FRCVVAGVTE KGKVLVPSVN PFSCALPMSN  60
DSIRKNDRAT VFKVQPCEKT IKEEQKEAID EKILLPKSGK NHRKRRKSIA PLPKACEVQG  120
SESADGSSFI GLGASNSSRY DSSLSLLTKK FLNLLLEAGD GTLDLNKAAQ ELDVQKRRMY  180
DITNVLEGVG LIEKGLKNMI RLKATHMSRP KEMEESRARL RAEIEIMSKE EHRLDRLIRE  240
RQEQLAVLLQ DENNKKWRYV TQEDINALPC FEDSTLIAIE APHGTIVEVP DPNESSEFPQ  300
RLSMVLRSSI GPINCYLLSD FADSRHEERF GSSQTEGMDL CSKHSCLPMD EIMTVFHSNA  360
SKQLASESPN SQESLSGIVK IEPSDLDRES DYWFLSELGV RLAEIWSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.24e-66E2F/DP family protein