PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028551689.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CAMTA

Protein Properties

Length: 1072aa MW: 120843 Da PI: 6.4617

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028551689.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.9	6.8e-52	16	131	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e + rwlk+ e+ iL+n+e++++++e++++p sgsl+L+nr++ r+frkDG+ w+kk+dg++v E+he+LKvg+v++l+cyYah+e np fqr XP_028551689.1 16 QEaQIRWLKPLEVFFILKNHERYQIEQETPEKPLSGSLFLFNRRVHRFFRKDGHVWRKKRDGRAVGEAHERLKVGNVDALNCYYAHGELNPFFQR 110 55589**************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylev 117 r+yw+L+ ++++ivlvhy+ev XP_028551689.1 111 RSYWMLDPAYDHIVLVHYREV 131 *****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1072 aa Download sequence
MSAVTGSSFD YDKLRQEAQI RWLKPLEVFF ILKNHERYQI EQETPEKPLS GSLFLFNRRV 60 HRFFRKDGHV WRKKRDGRAV GEAHERLKVG NVDALNCYYA HGELNPFFQR RSYWMLDPAY 120 DHIVLVHYRE VSEGRNMPQT VSQQPQEQLT YINGSSNVNN IQFQRFPSAY GEIYESYQIS 180 GSSVSGEVNS KYVGKNLDAD CLNMTNSSEN SDLSSQSNVN QALRELAEQL SLDKCDNKIF 240 EDLFPAHTNE CEKLENPAFP DNEKGCPFQS FHENLNPVDC STYDQGGNGK QKSQSSAFHH 300 SITRKNSPSW NDMLKLSSSS TGINADLRVI DSVALSLVPQ PSCYSSNATV NHHCGGNALK 360 LESDFEQFSS EEDIFGVPFD WLEQFSLRQP YQAVKNTELT SSGSDLSLQL CEANRILFGF 420 DGLESPNSAA CLAGAPCTTT GATSSGSNSK LSSTPKESII EWMGTTDLPV EKTSYSFDLR 480 GTWFDQGQHG TVVQKQLFRI REISPEWSFS FAKTKVLIVG DFLCNPLSYA WAVMFGDVEV 540 PAEIVQQGVL RCQAPEQITG KVTLCVTSRN KESCSEAREF EFRPKPATTS METLHNVNAT 600 KNSEELLLLV KFVRILLFRH HDLSVSEGAA QTEAKYHRKF KEAEEEWLQI IDQLQAGCEI 660 SSGLMDWVLQ ELIKDKFQQW YLSKISPIKD ENFLLSKEEQ GIIHMISGLG YEWALNPLLD 720 IGVGINFRDA NGWTALHWAA HLGREKMAAA LLAAGALAGA VTDPRPSDPV GKTAGAIAAA 780 SGHKGLAGYL SEADLTSHLS SLTMEACEIS KGSAAVEAEK AVESISERTA QLDGDGTEDD 840 LSLKDSLAAL RNTAQAAARI QAAFRAHSFR KRHEMAAGNF DEYGLTSKDI YGLISSSKNQ 900 RATHSYRDQK FDKAALSIQK KYRGWKGRKD FLTVRQHVVK IQAHVRGHQT RKKYREFLWT 960 VGVLEKVVLR WRRRGAGLRG FRPEPILADK EEEEDIVKVF RKQKVDDALD QAYSRVLSMV 1020 ESPRARQQYR RMLESYHKVK AEQGCAEEAI PQLQDLEFMQ DDELQYWIRY YQ

Sequence ? help Back to Top

Protein Sequence Length: 1072 aa Download sequence

MSAVTGSSFD YDKLRQEAQI RWLKPLEVFF ILKNHERYQI EQETPEKPLS GSLFLFNRRV  60
HRFFRKDGHV WRKKRDGRAV GEAHERLKVG NVDALNCYYA HGELNPFFQR RSYWMLDPAY  120
DHIVLVHYRE VSEGRNMPQT VSQQPQEQLT YINGSSNVNN IQFQRFPSAY GEIYESYQIS  180
GSSVSGEVNS KYVGKNLDAD CLNMTNSSEN SDLSSQSNVN QALRELAEQL SLDKCDNKIF  240
EDLFPAHTNE CEKLENPAFP DNEKGCPFQS FHENLNPVDC STYDQGGNGK QKSQSSAFHH  300
SITRKNSPSW NDMLKLSSSS TGINADLRVI DSVALSLVPQ PSCYSSNATV NHHCGGNALK  360
LESDFEQFSS EEDIFGVPFD WLEQFSLRQP YQAVKNTELT SSGSDLSLQL CEANRILFGF  420
DGLESPNSAA CLAGAPCTTT GATSSGSNSK LSSTPKESII EWMGTTDLPV EKTSYSFDLR  480
GTWFDQGQHG TVVQKQLFRI REISPEWSFS FAKTKVLIVG DFLCNPLSYA WAVMFGDVEV  540
PAEIVQQGVL RCQAPEQITG KVTLCVTSRN KESCSEAREF EFRPKPATTS METLHNVNAT  600
KNSEELLLLV KFVRILLFRH HDLSVSEGAA QTEAKYHRKF KEAEEEWLQI IDQLQAGCEI  660
SSGLMDWVLQ ELIKDKFQQW YLSKISPIKD ENFLLSKEEQ GIIHMISGLG YEWALNPLLD  720
IGVGINFRDA NGWTALHWAA HLGREKMAAA LLAAGALAGA VTDPRPSDPV GKTAGAIAAA  780
SGHKGLAGYL SEADLTSHLS SLTMEACEIS KGSAAVEAEK AVESISERTA QLDGDGTEDD  840
LSLKDSLAAL RNTAQAAARI QAAFRAHSFR KRHEMAAGNF DEYGLTSKDI YGLISSSKNQ  900
RATHSYRDQK FDKAALSIQK KYRGWKGRKD FLTVRQHVVK IQAHVRGHQT RKKYREFLWT  960
VGVLEKVVLR WRRRGAGLRG FRPEPILADK EEEEDIVKVF RKQKVDDALD QAYSRVLSMV  1020
ESPRARQQYR RMLESYHKVK AEQGCAEEAI PQLQDLEFMQ DDELQYWIRY YQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-128	CAMTA family protein