PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028551583.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HSF

Protein Properties

Length: 471aa MW: 52207.3 Da PI: 4.9997

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028551583.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113	2.1e-35	25	115	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+y++++d+++++++sws++++sfvv+++ ef++++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F kg+k++l++ XP_028551583.1 25 FLVKTYDMVDDSSTDDIVSWSNSKTSFVVWNPPEFSSRLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANDEFVKGQKNMLKN 110 9**************************************************************999.........************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k XP_028551583.1 111 IHRRK 115 *98 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MEPTSSAVDA IAGVSSAGAG GPAPFLVKTY DMVDDSSTDD IVSWSNSKTS FVVWNPPEFS 60 SRLLPTYFKH NNFSSFIRQL NTYGFRKIDP ERWEFANDEF VKGQKNMLKN IHRRKPIHSH 120 SNPPLVAADA ERAVLEEEIE RLQQEKVVLQ ADLRRFKQQQ SGTKIQLEDI ERRLLNMEQR 180 QAKMVAFLQR AVQNPKFLDN LVIMAGSSAS ALHKKRRHPG VEYCPEVADN SVCENSCSNS 240 KPTTEVGQVF SQDFCDKLRL ELSPAFSESN LVSPSNQGFN EGIRSPQVRP GDDDCPLRIE 300 CLHLVPETLE LSDTGASICP RKNSLLADDG DGLISCHLKL SLASSSMHID SCNNLSRIPS 360 SVDLGATIDN TGDDSTYISG QNKNANQVLT DAEAPPFRGV SQAGKQAPLP ANGGVNDKFW 420 EHFLTERPGS SDTEEASSSL REDPCEVPQE VRMPGEENNR INRKDMEQLT L

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MEPTSSAVDA IAGVSSAGAG GPAPFLVKTY DMVDDSSTDD IVSWSNSKTS FVVWNPPEFS  60
SRLLPTYFKH NNFSSFIRQL NTYGFRKIDP ERWEFANDEF VKGQKNMLKN IHRRKPIHSH  120
SNPPLVAADA ERAVLEEEIE RLQQEKVVLQ ADLRRFKQQQ SGTKIQLEDI ERRLLNMEQR  180
QAKMVAFLQR AVQNPKFLDN LVIMAGSSAS ALHKKRRHPG VEYCPEVADN SVCENSCSNS  240
KPTTEVGQVF SQDFCDKLRL ELSPAFSESN LVSPSNQGFN EGIRSPQVRP GDDDCPLRIE  300
CLHLVPETLE LSDTGASICP RKNSLLADDG DGLISCHLKL SLASSSMHID SCNNLSRIPS  360
SVDLGATIDN TGDDSTYISG QNKNANQVLT DAEAPPFRGV SQAGKQAPLP ANGGVNDKFW  420
EHFLTERPGS SDTEEASSSL REDPCEVPQE VRMPGEENNR INRKDMEQLT L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-125	HSF family protein