PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028551220.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TCP

Protein Properties

Length: 406aa MW: 44445.6 Da PI: 6.907

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028551220.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.1	6.6e-38	77	204	2	131
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+q+a +ai+el+++ ss e ++ ++++a+ + + +++ XP_028551220.1 77 SGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGFDQPSKAIEWLIQAAAAAIDELPSLWSSFT-ELpSPTGEQNQAE----QPHPSKSG 166 689***********************************************************33333.2233444444444....34556666 PP TCP 96 kskksqksaasalnlak.esrakararare.rtrekmr 131 +s+ s++s++s+l+l e ka +rare + +ek + XP_028551220.1 167 CSSTSETSKSSVLSLPCsEICVKAMERAREvSAKEKEK 204 999999999999999987889*******77777754 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MYWHDLGMQM ENGNARKRAR FINGGDPSIV LEPKESHRYI NDGCSEKKVN MAASSAGGSF 60 RPWQLPSSRI FRVSRASGGK DRHSKVLTSK GLRDRRVRLS VSTAIQFYDL QDRLGFDQPS 120 KAIEWLIQAA AAAIDELPSL WSSFTELPSP TGEQNQAEQP HPSKSGCSST SETSKSSVLS 180 LPCSEICVKA MERAREVSAK EKEKDGEDGG EHFSGADHPH GSFTKLLTDQ SDSVSDSTPV 240 TAGGQFQTLL PSAIVTADYF GQAGFFTRLP AQTHFVNSSP LVEMAATGDQ LEMQQFSFMQ 300 DYIDYNFNFP AASGLSGFQR GTLQSNSSVH LTQQHLRHQL LRFSSPPFSV MVGPNLQLMT 360 PASAPSSTEN FFCSGLEGRL QVSRELPTPF LLDGYISSDL KGKGKN

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MYWHDLGMQM ENGNARKRAR FINGGDPSIV LEPKESHRYI NDGCSEKKVN MAASSAGGSF  60
RPWQLPSSRI FRVSRASGGK DRHSKVLTSK GLRDRRVRLS VSTAIQFYDL QDRLGFDQPS  120
KAIEWLIQAA AAAIDELPSL WSSFTELPSP TGEQNQAEQP HPSKSGCSST SETSKSSVLS  180
LPCSEICVKA MERAREVSAK EKEKDGEDGG EHFSGADHPH GSFTKLLTDQ SDSVSDSTPV  240
TAGGQFQTLL PSAIVTADYF GQAGFFTRLP AQTHFVNSSP LVEMAATGDQ LEMQQFSFMQ  300
DYIDYNFNFP AASGLSGFQR GTLQSNSSVH LTQQHLRHQL LRFSSPPFSV MVGPNLQLMT  360
PASAPSSTEN FFCSGLEGRL QVSRELPTPF LLDGYISSDL KGKGKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	5e-48	TCP family protein