PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028551171.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 263aa    MW: 29734.7 Da    PI: 5.741
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028551171.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61e-0899146455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L+ l+P +     +K + Ka +L + ++Y++sLq
  XP_028551171.1  99 SHSLAERVRREKISERMKVLQGLVPGC-----EKvVGKALMLDEIINYVQSLQ 146
                     8*************************9.....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MTNNYSVSFD PFLYYQDSAE TIPDSSSTVL QPMSRSSSIN SANSSHYMES NNLYNFKVTK  60
NGRNRKQKKA IDEKKMKEGE EPPVGYIHVR ARRGQATDSH SLAERVRREK ISERMKVLQG  120
LVPGCEKVVG KALMLDEIIN YVQSLQNQIE FLSMKLASVN PMQFDFSVDY DCLVNQTETM  180
PSSLLHASLT QATNLDEGSS KAYETMMNPP PLLLQCQGSI PLFQEKDSFF MQVGDERQEL  240
ILNNIVLNNM CLFQQGSKGE GPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-53bHLH family protein