PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028551075.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

E2F/DP

Protein Properties

Length: 459aa MW: 50871 Da PI: 4.5245

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028551075.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	74.8	8.9e-24	144	209	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r ++sL+llt+k+++ll++ ++g+++ln++a++L +v +RRiYDi+NVLe+++liek+ kn+i wkg XP_028551075.1 144 RFDSSLGLLTKKVINLLRHGQDGTLDLNKAAETL---KV--PKRRIYDITNVLEGIGLIEKNLKNKILWKG 209 6789****************************...88..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MSGEQEAENR PPTLADQIVE PLNYNLLLSS APRPLTFADE YHSFLPVGDQ LEATEEAADS 60 TTVNTPLKRK ADRQDADAAE SKQLASSSGC AMVANSSLTR LSWIGGRKKG KSKVLNCKKS 120 EPQTPLSNEG SSSVNFLSPV STSRFDSSLG LLTKKVINLL RHGQDGTLDL NKAAETLKVP 180 KRRIYDITNV LEGIGLIEKN LKNKILWKGL DDLRPGEDEG SSILQAEVEN LALQECNLDV 240 QINEMRERIR ELSEDENSSK WLYVTEEDIK QLPCFQNQTL IAIKAPHGTT LEVPDPDEIS 300 HMTTISFCIL AALPFKAGEN PQRRYTMVLR STMGQIDVYL VSKFEGTFEE LISVDTSSNL 360 PCTSSSGCNE HPDAPTLTDH SKGNELELQV HEDHDSWRIN ADSNATQDFT DGMMKVVPPD 420 ANPYSDYWLL SDTGFSITDM WNSPSPCWLF NLSKLNNGM

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MSGEQEAENR PPTLADQIVE PLNYNLLLSS APRPLTFADE YHSFLPVGDQ LEATEEAADS  60
TTVNTPLKRK ADRQDADAAE SKQLASSSGC AMVANSSLTR LSWIGGRKKG KSKVLNCKKS  120
EPQTPLSNEG SSSVNFLSPV STSRFDSSLG LLTKKVINLL RHGQDGTLDL NKAAETLKVP  180
KRRIYDITNV LEGIGLIEKN LKNKILWKGL DDLRPGEDEG SSILQAEVEN LALQECNLDV  240
QINEMRERIR ELSEDENSSK WLYVTEEDIK QLPCFQNQTL IAIKAPHGTT LEVPDPDEIS  300
HMTTISFCIL AALPFKAGEN PQRRYTMVLR STMGQIDVYL VSKFEGTFEE LISVDTSSNL  360
PCTSSSGCNE HPDAPTLTDH SKGNELELQV HEDHDSWRIN ADSNATQDFT DGMMKVVPPD  420
ANPYSDYWLL SDTGFSITDM WNSPSPCWLF NLSKLNNGM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	183	LKVPKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36010.1	1e-112	E2F/DP family protein