PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028550154.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CAMTA

Protein Properties

Length: 1006aa MW: 114090 Da PI: 5.8711

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028550154.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	177.8	1.4e-55	20	134	3	116
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e ++rwl++ ei++iL n++k+ ++ e++++p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK g+v+vl+cyYah+e++++fqr XP_028550154.1 20 QEaQHRWLRPIEICEILRNYHKFCIAPEPPNKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGEDDENFQR 114 5559***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhyle 116 r+yw+Leeel +ivlvhy+ XP_028550154.1 115 RSYWMLEEELMHIVLVHYRA 134 ****************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1006 aa Download sequence
MAEARISGVT LPLNLEQILQ EAQHRWLRPI EICEILRNYH KFCIAPEPPN KPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDDE NFQRRSYWML 120 EEELMHIVLV HYRAIKGSKA NFLQPREDGA IARIAHADSP AHSTSSANQS QSPSLATDLE 180 SPNSTHLSEF ENDSADIFQP SSRYNSFLKM QQYGPWMKVV QAGMDRLANE SDGGLRFTGT 240 KPMNNDMASW HEILERCSTG LQSSTFDVIV ASTCANTMVN FPRQNPVADI LNGGFLDAKE 300 DVTTVVDKPM LQFDDEVVDS LVPFNTRVEN IQTSDVNHMK NQSDLSLIDY QGLKKYDSFS 360 RWASNELGEV DDSQITLNSG IYWSTLESDS VIAESSVQNQ EHFDTYLMSP LISHDQLFSI 420 IDFSPNWTYA EMETKVLVKG KFFLNKEDVQ KYRWSCMFGE IEVQADILAD GTLCCHTPSH 480 KPGRVPFYVT CSNRLACSEI REFEYKMSKM HELGNTDSDG SDAYDIDLLF RLEKLLILED 540 FDHSSPDCSH TRERPHINCT VCSMIMEVDD ELFNLFKHTP DEDLSHINAE NQLLEESLKE 600 KLHVWLLHKV GEDGKGPNVL DKEGQGVLHL AAALGYDWAI KPIIAAGVGI NFRDLHGWTA 660 LHWAAFFGRE RTVVTLVALD ASPGALTDPT PEFPSGRTPA DLASQNGYKG IAGFLAESSL 720 FKHLRELTLK DSESCDLTES SGILGYHHGA DKGSSHHAFG GTETSLKDSL SAVRNATEAA 780 ARIYQVFRMQ SFHRKKLTDY VDENCGVSNE DALSLIYVKS NKSGHHVMPV HTAAIKIQNK 840 FRGWKGRKEF LSIRQHIVKI QAHVRGHQVR KHYRKILWSV GIVEKVILRW RRKGSGLRGF 900 RSEEPPEGPS NENQVIKEDD YDFLQEGRKQ TEARLEKALA RVKSMVQYPE AIDQYRRLLN 960 VVEELQESDF IQAETPNEIM EPVGVVDLML ELEGLLQDDP HMPPNW

Sequence ? help Back to Top

Protein Sequence Length: 1006 aa Download sequence

MAEARISGVT LPLNLEQILQ EAQHRWLRPI EICEILRNYH KFCIAPEPPN KPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDDE NFQRRSYWML  120
EEELMHIVLV HYRAIKGSKA NFLQPREDGA IARIAHADSP AHSTSSANQS QSPSLATDLE  180
SPNSTHLSEF ENDSADIFQP SSRYNSFLKM QQYGPWMKVV QAGMDRLANE SDGGLRFTGT  240
KPMNNDMASW HEILERCSTG LQSSTFDVIV ASTCANTMVN FPRQNPVADI LNGGFLDAKE  300
DVTTVVDKPM LQFDDEVVDS LVPFNTRVEN IQTSDVNHMK NQSDLSLIDY QGLKKYDSFS  360
RWASNELGEV DDSQITLNSG IYWSTLESDS VIAESSVQNQ EHFDTYLMSP LISHDQLFSI  420
IDFSPNWTYA EMETKVLVKG KFFLNKEDVQ KYRWSCMFGE IEVQADILAD GTLCCHTPSH  480
KPGRVPFYVT CSNRLACSEI REFEYKMSKM HELGNTDSDG SDAYDIDLLF RLEKLLILED  540
FDHSSPDCSH TRERPHINCT VCSMIMEVDD ELFNLFKHTP DEDLSHINAE NQLLEESLKE  600
KLHVWLLHKV GEDGKGPNVL DKEGQGVLHL AAALGYDWAI KPIIAAGVGI NFRDLHGWTA  660
LHWAAFFGRE RTVVTLVALD ASPGALTDPT PEFPSGRTPA DLASQNGYKG IAGFLAESSL  720
FKHLRELTLK DSESCDLTES SGILGYHHGA DKGSSHHAFG GTETSLKDSL SAVRNATEAA  780
ARIYQVFRMQ SFHRKKLTDY VDENCGVSNE DALSLIYVKS NKSGHHVMPV HTAAIKIQNK  840
FRGWKGRKEF LSIRQHIVKI QAHVRGHQVR KHYRKILWSV GIVEKVILRW RRKGSGLRGF  900
RSEEPPEGPS NENQVIKEDD YDFLQEGRKQ TEARLEKALA RVKSMVQYPE AIDQYRRLLN  960
VVEELQESDF IQAETPNEIM EPVGVVDLML ELEGLLQDDP HMPPNW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	CAMTA family protein