PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028550048.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 267aa MW: 29965.3 Da PI: 5.9747

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028550048.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.1	2.4e-16	48	96	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r +h++ E+rRR++iN++f+ Lr llP++ +K +Ka+ L +++eYI+ L XP_028550048.1 48 RSKHSATEQRRRSKINDRFQVLRGLLPNS----EQKRDKASFLLEVIEYIRFL 96 899***********************8....7***************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
MESVSRSSKV FEDDDDDEEF GKREGSFHKE LTLTIDGRSI DQTASAPRSK HSATEQRRRS 60 KINDRFQVLR GLLPNSEQKR DKASFLLEVI EYIRFLHEKV QKYESIYPGW IDENTKLLAW 120 NNHQDSGDNI GDASIIKNGS APGFVLSEAD NLASHFQWMR ASNPGDCAIS NDMLDELTID 180 EGTISVSCAY SQGLLNNLSE ALQNSGIDLS RASVSVQINL GRKSGGRSSK PSLSSKLGWR 240 YYCFSTLYQG ACLLAWAFRQ KHSECYC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	3e-52	bHLH family protein