PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028549803.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | Trihelix | ||||||||
Protein Properties | Length: 402aa MW: 45929.6 Da PI: 4.3223 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 46.8 | 7.5e-15 | 141 | 225 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++ + aL++a ++ + +r++l+ W ev+kk+ + + rs +qC+++++ l+k+ykk+k+ + s ss++++yf++++ XP_028549803.1 141 WSEDSTFALLDAWGDRFLQNGRKSLRSDEWGEVAKKVsQGSKTPRSEVQCRNRLDTLKKKYKKEKAKYPDY-SSSSRKWVYFRKMD 225 *************************************4445679*************************97.78888********8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence |
MDDTEDDARY PPNSYTQSNR RPIPSSNYSN LHARNNSYQL QIPRGYPDDY VDEDEEERNE 60 VDLAVNDAEE EEDEEVSGGR GYLQTRNEVD DDDEDDADES SESRGKRRRL DQYARGFELV 120 PRSVVTPAVK PLSCRTSLAD WSEDSTFALL DAWGDRFLQN GRKSLRSDEW GEVAKKVSQG 180 SKTPRSEVQC RNRLDTLKKK YKKEKAKYPD YSSSSRKWVY FRKMDELMSS PPPPPPAARQ 240 HSQLPRLPCG IDAGEYVFAS SRLYLNNSDA IAEMRDSPGD TASEGEGDEV DDESDGLPPR 300 REKVGGNSES SFKMLADSIQ KFGAIYEKIE NNRRQQMAEL ERMRKEFHRD LELQKRQILD 360 GAQAEIARIR QEDREEEGEE NTDEDDNGDN DDTDVSAENM SG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 106 | 110 | KRRRL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 4e-59 | Trihelix family protein |