PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028549583.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CAMTA

Protein Properties

Length: 1046aa MW: 117462 Da PI: 6.1577

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028549583.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	169.6	4.8e-53	15	129	4	117
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 ++rwlkn+e++ iL+n+e+ +++e++++p+sgsl+L+nr+++++frkDG+ w+kkkdg++v E+he+LKvg+v++l+cyYah+e+n+ fqrr XP_028549583.1 15 DaQNRWLKNSEVLFILQNHENLPIEQETPDKPTSGSLFLFNRRVLKFFRKDGHMWRKKKDGRAVGEAHERLKVGNVDALNCYYAHGEKNRYFQRR 109 3489***************************************************************************************** PP CG-1 98 cywlLeeelekivlvhylev 117 +yw+L++++++ivlvhy+ev XP_028549583.1 110 IYWMLDHAYDHIVLVHYREV 129 ****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1046 aa Download sequence
MQSGLSFHFG KLRQDAQNRW LKNSEVLFIL QNHENLPIEQ ETPDKPTSGS LFLFNRRVLK 60 FFRKDGHMWR KKKDGRAVGE AHERLKVGNV DALNCYYAHG EKNRYFQRRI YWMLDHAYDH 120 IVLVHYREVS EGRFLPPIDS QQTQEPLSSR NGNSSANNIQ FRRVPSATSE VYDSCETSCS 180 PISGEANSQH VGKDVDTNRS NMFNTSANSD PLSQQEINLA LRDLEEQLSL DKYDDNVPVD 240 ILPVHTDEHK NLEDLALMDS KTWNSFQKLQ ENLTPMKEYT GCDQGVNGQL KSHDRKISPS 300 WNDMLERTEL DAHGRAFNAM ALANGSKPST INAAGAYHHG IENEFKHGSQ FSSENIFDAQ 360 LEQISWQHPG RAGNYAGRIA DGSDINRLLF LGLGSLGSPD SVVDLAAGEL YNAPGTTGDG 420 RNSNEVSVQK ENGIDYMGNV DLYDRNNAYS SDLLGMYSDQ GQHGSSIAEE PCLTVPHKLL 480 FRIREISPEW SFSFERTKVI ITGDFLCNPS SRSWAVMFGE VQVPAEIIQE GVLRCQAPEH 540 SSGKVALCIT SGNKESCSEV REFEFHSKSV TSSLETSHLV NATINSEELS LLVEFINVLL 600 CRSDELSVSK GAEPKETECR RKLKAAEDQW FQSHELQTEI LPGAIDGILQ ELIKDKFQQW 660 LSSKTNAKED GSCLLSNTEQ HIIHMISGLG YEWALKPILD AGVGINFRDA NGRTALHWAA 720 RFGREKMAAA LLATGAFAGA VTDPTPQDPV GKTAGAIAAA SGHNGLAGYL SEAYLTDYLY 780 SIKGLTVVED EKIVESISER SASVQVGETE DALSLKDSLA AVRNAAQAAA RIQAAFRAHS 840 FKKRQEKEAM NRDEYGMTSE EMHCLASSIK IQKTLNSYPD QKLDKAALSI QTKYRGWKGR 900 KAFLSFRQRV VKIQAHVRGH QARMKYKELL SAVSVLEKLI LRWRRRGVGL RGFLLKSDIA 960 DEGEEEDIIK VFRKQKVDAA LEQALSRVLS MVESPRSRQQ YRRMLECYCQ VKAEQQSAEE 1020 AIPRLRDYFE LVEDDEFLHW LQEDQL

Sequence ? help Back to Top

Protein Sequence Length: 1046 aa Download sequence

MQSGLSFHFG KLRQDAQNRW LKNSEVLFIL QNHENLPIEQ ETPDKPTSGS LFLFNRRVLK  60
FFRKDGHMWR KKKDGRAVGE AHERLKVGNV DALNCYYAHG EKNRYFQRRI YWMLDHAYDH  120
IVLVHYREVS EGRFLPPIDS QQTQEPLSSR NGNSSANNIQ FRRVPSATSE VYDSCETSCS  180
PISGEANSQH VGKDVDTNRS NMFNTSANSD PLSQQEINLA LRDLEEQLSL DKYDDNVPVD  240
ILPVHTDEHK NLEDLALMDS KTWNSFQKLQ ENLTPMKEYT GCDQGVNGQL KSHDRKISPS  300
WNDMLERTEL DAHGRAFNAM ALANGSKPST INAAGAYHHG IENEFKHGSQ FSSENIFDAQ  360
LEQISWQHPG RAGNYAGRIA DGSDINRLLF LGLGSLGSPD SVVDLAAGEL YNAPGTTGDG  420
RNSNEVSVQK ENGIDYMGNV DLYDRNNAYS SDLLGMYSDQ GQHGSSIAEE PCLTVPHKLL  480
FRIREISPEW SFSFERTKVI ITGDFLCNPS SRSWAVMFGE VQVPAEIIQE GVLRCQAPEH  540
SSGKVALCIT SGNKESCSEV REFEFHSKSV TSSLETSHLV NATINSEELS LLVEFINVLL  600
CRSDELSVSK GAEPKETECR RKLKAAEDQW FQSHELQTEI LPGAIDGILQ ELIKDKFQQW  660
LSSKTNAKED GSCLLSNTEQ HIIHMISGLG YEWALKPILD AGVGINFRDA NGRTALHWAA  720
RFGREKMAAA LLATGAFAGA VTDPTPQDPV GKTAGAIAAA SGHNGLAGYL SEAYLTDYLY  780
SIKGLTVVED EKIVESISER SASVQVGETE DALSLKDSLA AVRNAAQAAA RIQAAFRAHS  840
FKKRQEKEAM NRDEYGMTSE EMHCLASSIK IQKTLNSYPD QKLDKAALSI QTKYRGWKGR  900
KAFLSFRQRV VKIQAHVRGH QARMKYKELL SAVSVLEKLI LRWRRRGVGL RGFLLKSDIA  960
DEGEEEDIIK VFRKQKVDAA LEQALSRVLS MVESPRSRQQ YRRMLECYCQ VKAEQQSAEE  1020
AIPRLRDYFE LVEDDEFLHW LQEDQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-134	CAMTA family protein