PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028548855.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 671aa MW: 78079.2 Da PI: 7.767

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028548855.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.2	6.5e-24	40	128	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Y++YA+++GFsvrk++++ ++++i ++++vCsk g++++++ + +++ +++ trtgC a+++ ++dg+w+v+k+ + HnH+la XP_028548855.1 40 EMYCKYAHNAGFSVRKEHHSFWPNSRKIRSKDYVCSKAGFKKSSDLN-LQRKYRKSDTRTGCPAMIRFIVDEDGNWKVQKFIESHNHDLA 128 58****************************************999.888889999*****************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence
MADEELVDPK KYLEERCKPK CVKRLFDYQE VYKCEKEAYE MYCKYAHNAG FSVRKEHHSF 60 WPNSRKIRSK DYVCSKAGFK KSSDLNLQRK YRKSDTRTGC PAMIRFIVDE DGNWKVQKFI 120 ESHNHDLARP EDCHLLRSCR YMSDEKASIL KTLTEAGIRT VDAFSYLADE VGGVENVGFS 180 KRDAYNYIQK EKRAKNEFGD TNSLIQLFKE RQADDPMFAW DVQFDELDKL LNFFWVDGMG 240 RIDFDCFGDV VIFDTSYRLN KYNLVCAPFV GVNNHWQNIL LGVAFLSEET IESFTWLFRT 300 FVRIMGDKYP ITIFTNQDQA MTRAIEVALP STRHRLCQWH ISKKAPSKVW CFNSNDKVRG 360 LFYKCLSKCD SEEQFEKTWA EMITEGSLHS NGWLEELYKI RKKWSTAFNK DCFSMDILST 420 QRSEFINNVC HDILKPTSSR TDYFLGLEKV MMTWRLSEQD EDYKCNQSVA VPVIKCSPIL 480 KQAAQFYSRK LYLFFEKEFL DGVGGMSIEH ASSDSSQFLI KSAENLDHST SWVVHFDAID 540 GSIQCTCGKF ETMGLLCSHC MRVFRQLDIV NIPKKYLLMR WSARAKKDIY AARMFIGTGK 600 TSEAGSGLSF RNHIIRFSYL IAAQAQGNED AEQYMLNAMK DMAENIDLIL HGKKFNQKFV 660 SNEKGMCEEN R

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence

MADEELVDPK KYLEERCKPK CVKRLFDYQE VYKCEKEAYE MYCKYAHNAG FSVRKEHHSF  60
WPNSRKIRSK DYVCSKAGFK KSSDLNLQRK YRKSDTRTGC PAMIRFIVDE DGNWKVQKFI  120
ESHNHDLARP EDCHLLRSCR YMSDEKASIL KTLTEAGIRT VDAFSYLADE VGGVENVGFS  180
KRDAYNYIQK EKRAKNEFGD TNSLIQLFKE RQADDPMFAW DVQFDELDKL LNFFWVDGMG  240
RIDFDCFGDV VIFDTSYRLN KYNLVCAPFV GVNNHWQNIL LGVAFLSEET IESFTWLFRT  300
FVRIMGDKYP ITIFTNQDQA MTRAIEVALP STRHRLCQWH ISKKAPSKVW CFNSNDKVRG  360
LFYKCLSKCD SEEQFEKTWA EMITEGSLHS NGWLEELYKI RKKWSTAFNK DCFSMDILST  420
QRSEFINNVC HDILKPTSSR TDYFLGLEKV MMTWRLSEQD EDYKCNQSVA VPVIKCSPIL  480
KQAAQFYSRK LYLFFEKEFL DGVGGMSIEH ASSDSSQFLI KSAENLDHST SWVVHFDAID  540
GSIQCTCGKF ETMGLLCSHC MRVFRQLDIV NIPKKYLLMR WSARAKKDIY AARMFIGTGK  600
TSEAGSGLSF RNHIIRFSYL IAAQAQGNED AEQYMLNAMK DMAENIDLIL HGKKFNQKFV  660
SNEKGMCEEN R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-104	FAR1 family protein