PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028547820.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 420aa MW: 46740.6 Da PI: 8.4653

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028547820.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.7	1.2e-09	241	289	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_028547820.1 241 NSHSLAERVRREKISERMKFLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 289 58************************....899***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MDFGKKRKLG VENRSVEALN CHTSSFANTD WHQLSSSLSS WNQPSDTHTL SFPKAANASS 60 STIGKPVPLN WNLSDSVEKE EIYLSTGPGL LPLSLSNFSS DTEFIERSAR FSCFVSNESN 120 AIAETQMQMD IAGKTEALKD KSKLNYHSSN SGSSKKDQSE LESPITKKRK SKQEMELHKS 180 QDTAQLPSDV AKNVVDSKQK AEKNSLIMAT VKPSGKNSKV AGEAQKEDYI HVRARRGQAT 240 NSHSLAERVR REKISERMKF LQDLVPGCSK ITGKAVMLDE IINYVQSLQR QVEFLSMKLA 300 AVNPRLDFNI EGILSKDLFQ TRSGPSSAIG FSHDMINHQL HSLHQNIIQV GMPGVMNPTE 360 VFRRELNVQL PSTSTFKEAA QQMPNAWDDD LQNIIQMTYG NSTPLKTQDL NGTPHDLFPL

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MDFGKKRKLG VENRSVEALN CHTSSFANTD WHQLSSSLSS WNQPSDTHTL SFPKAANASS  60
STIGKPVPLN WNLSDSVEKE EIYLSTGPGL LPLSLSNFSS DTEFIERSAR FSCFVSNESN  120
AIAETQMQMD IAGKTEALKD KSKLNYHSSN SGSSKKDQSE LESPITKKRK SKQEMELHKS  180
QDTAQLPSDV AKNVVDSKQK AEKNSLIMAT VKPSGKNSKV AGEAQKEDYI HVRARRGQAT  240
NSHSLAERVR REKISERMKF LQDLVPGCSK ITGKAVMLDE IINYVQSLQR QVEFLSMKLA  300
AVNPRLDFNI EGILSKDLFQ TRSGPSSAIG FSHDMINHQL HSLHQNIIQV GMPGVMNPTE  360
VFRRELNVQL PSTSTFKEAA QQMPNAWDDD LQNIIQMTYG NSTPLKTQDL NGTPHDLFPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	7e-65	bHLH family protein