PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028547764.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 178aa    MW: 19728.5 Da    PI: 4.4785
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028547764.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.32.3e-0784126855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + r+RR ri  + +eL +++P        Kls a++ + A +YIk L+
  XP_028547764.1  84 AARKRRMRISGKTQELARHIPGG-----VKLSTADMFQSAYKYIKFLE 126
                     569******************96.....6****************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MDHFEVDSEV AEALTGFLND DDPSLHSIDT LFQNDDFMAG YIQQQPPPLL EQQPPPQLFE  60
PNVYPTLAPG CSAPPPSLSV QSVAARKRRM RISGKTQELA RHIPGGVKLS TADMFQSAYK  120
YIKFLEAQLA VLELTTPSVQ ECGSRKEDEY LHALLASLTL QEKLAVQGMC LVPLYELP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-21bHLH family protein