PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028123523.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 313aa MW: 35011.6 Da PI: 5.4571

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028123523.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.6	3.9e-12	115	166	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ +r+l+P + + ++ + a+i A++++k+L+ XP_028123523.1 115 QRMTHIAVERNRRKQMNEYLAVIRSLMPAS---YVQRGDQASIIGGAINFVKELE 166 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence
MALETVVYKQ DPFGYGCKEF YNLAGWGYHE EDNKALIEHG MNANGDSLSS SVMQNQNVKE 60 HWEPNSSPEA CSGDRLLGQE GSPPTPMEAP AATMLGRRKR RRSKSGKNKE EMENQRMTHI 120 AVERNRRKQM NEYLAVIRSL MPASYVQRGD QASIIGGAIN FVKELEQLLQ TLDVQMRTTS 180 TQESKNGCSP LFANFFTFPQ YSTLSSNSNN SPEVENQLGS EAFADIEVTM VESHANLKIL 240 SKRRPRQLLK MVTGLQCLWL TVLHLNVTTV DQMVLYSLSV KVEDGCQLTT VDEIAEAVNQ 300 LLGRIEEEAA ALS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	102	RKRRR
2	98	103	RKRRRS
3	116	127	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	6e-89	bHLH family protein