PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028121700.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 178aa MW: 21040.3 Da PI: 6.5837

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028121700.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.1	3.5e-19	20	71	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++t+eq++ Le+ F+ n+ ++ +++ +LA++lgL+ rqV +W+qN+Ra++k+ XP_028121700.1 20 RLTQEQVRLLETSFNFNNRLDPDRKSQLAEELGLPPRQVAIWYQNKRARWKN 71 68************************************************95 PP
2	HD-ZIP_I/II	113.8	1.1e-36	18	108	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +rl++eqv+lLE+sF+ +++L+p+rK++la+eLgl prqva+W+qn+RAR+k++ lE dy++L+++++++ e+nerL++eve+Lr+el++ XP_028121700.1 18 NKRLTQEQVRLLETSFNFNNRLDPDRKSQLAEELGLPPRQVAIWYQNKRARWKNQSLEADYKSLHEKLENVLEDNERLQREVERLRQELDK 108 58*************************************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MDYFQSHSHT RKHPLKCNKR LTQEQVRLLE TSFNFNNRLD PDRKSQLAEE LGLPPRQVAI 60 WYQNKRARWK NQSLEADYKS LHEKLENVLE DNERLQREVE RLRQELDKAQ DMLLSFNNMN 120 NTTNNSSLSN SCDEVGSSSF IHDHHHQSII KVDDHDHHLD KELYACLIDG NNFFAPIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	2e-24	HD-ZIP family protein