PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028119641.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 410aa MW: 45331.4 Da PI: 5.2213

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028119641.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.8	1.7e-07	216	263	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er R ++i ++ L++l+P + +k Ka +L + ++Y++sLq XP_028119641.1 216 SHSLAERVRSKKISERTKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 263 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MFRLQNKNYT SIKDSPEVEA FEGNELNSVF SLPPQGQQFQ GGDHMSLNEL MTRTVKTDPG 60 METGGRISGS SPEISGLNGF EMNYGLSRTT SYPAAVISEV AVTATAVTEA KQRDSSVLPE 120 KMSFKERKAD KSHNLKAVAE EEDCKEKRIR GCTEQGESKI TEQNSNSDND SKNTSNNNNN 180 KRETSADTSK ENSKVSEVQK PDYIHVRARR GQATDSHSLA ERVRSKKISE RTKYLQDLVP 240 GCNKITGKAG MLDEIINYVQ SLQRQVEIEN IFLSMKLAAV NPTLDFNIDN FVVTEVFSAC 300 TSNFPIEVSS EIANPAYLQF NPLQQVVSCS GLEMGINAPD MALRRTISAP VSSPETFLDS 360 SCFKHIQSSS AWEANLHNLY GVEFLQGRSP SFQAQQFTGS NEASNLKMDI

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MFRLQNKNYT SIKDSPEVEA FEGNELNSVF SLPPQGQQFQ GGDHMSLNEL MTRTVKTDPG  60
METGGRISGS SPEISGLNGF EMNYGLSRTT SYPAAVISEV AVTATAVTEA KQRDSSVLPE  120
KMSFKERKAD KSHNLKAVAE EEDCKEKRIR GCTEQGESKI TEQNSNSDND SKNTSNNNNN  180
KRETSADTSK ENSKVSEVQK PDYIHVRARR GQATDSHSLA ERVRSKKISE RTKYLQDLVP  240
GCNKITGKAG MLDEIINYVQ SLQRQVEIEN IFLSMKLAAV NPTLDFNIDN FVVTEVFSAC  300
TSNFPIEVSS EIANPAYLQF NPLQQVVSCS GLEMGINAPD MALRRTISAP VSSPETFLDS  360
SCFKHIQSSS AWEANLHNLY GVEFLQGRSP SFQAQQFTGS NEASNLKMDI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	4e-59	bHLH family protein