PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028118922.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 604aa MW: 67901.4 Da PI: 7.9202

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028118922.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.8	2.6e-18	65	108	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd ll ++vk++ g++Wk+Ia+++ gRt+ qc +rwqk+l XP_028118922.1 65 WTEEEDNLLSEYVKKYNGRNWKKIAECLS-GRTDVQCLHRWQKVL 108 ***************************.**********986 PP
2	Myb_DNA-binding	57.7	2.6e-18	114	160	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+ ++++v+++G + W+ Ia+ ++ gR +kqc++rw+++l XP_028118922.1 114 KGPWTKDEDDCIIELVEKYGCKKWSVIAKFLP-GRIGKQCRERWHNHL 160 79****************************.***********97 PP
3	Myb_DNA-binding	51.1	3e-16	166	208	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ +l +++k +G++ W+ ar ++ gRt++ +k++w+ XP_028118922.1 166 KEAWTKEEEAILTCYHKIYGNR-WAELARFLP-GRTDNAIKNHWN 208 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence
MIEVKKEEEY VMDLTKEVGL STFSPVSDSS GDTFTQRSPS SQAADWTLFF SLRKTTIRRS 60 SQAGWTEEED NLLSEYVKKY NGRNWKKIAE CLSGRTDVQC LHRWQKVLNP ELVKGPWTKD 120 EDDCIIELVE KYGCKKWSVI AKFLPGRIGK QCRERWHNHL DPAVKKEAWT KEEEAILTCY 180 HKIYGNRWAE LARFLPGRTD NAIKNHWNCS VKKKWDLNLP PSLYSQFLAA SPDFCSTETK 240 SVCAEVTVDR HNLTEVSVDL SRGKEHVGDA CSTELVLGNA NLGENRLESN PSMLGACRFS 300 EAGLNKLISP LRRIQFNGTA IASRLTNEPS QGNDHHDIRG TFQASSSDDL VVASCSTKSS 360 FTPLDVVLPV TTEKTFESPK RQRGRDLDVV NLESRSLLDN SFLCLSTFGV REHNGHVSKK 420 SRVDETHHLD DKHFGCLCYK PPQLKDFVIP DENGGRCPSV ENHVRRANSQ VHFSTPPDLA 480 LSISFNSSSP ESMLRNSAMS YKNTPSIIRK RASREAGSGN YSVRNCTPAR MISCTSEADF 540 VNVKQDAHSP FHRPKISVAD KSRERRLECE FDKEWDSAVA RCCTPVSTSA SSGLNFGANM 600 MLTP

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence

MIEVKKEEEY VMDLTKEVGL STFSPVSDSS GDTFTQRSPS SQAADWTLFF SLRKTTIRRS  60
SQAGWTEEED NLLSEYVKKY NGRNWKKIAE CLSGRTDVQC LHRWQKVLNP ELVKGPWTKD  120
EDDCIIELVE KYGCKKWSVI AKFLPGRIGK QCRERWHNHL DPAVKKEAWT KEEEAILTCY  180
HKIYGNRWAE LARFLPGRTD NAIKNHWNCS VKKKWDLNLP PSLYSQFLAA SPDFCSTETK  240
SVCAEVTVDR HNLTEVSVDL SRGKEHVGDA CSTELVLGNA NLGENRLESN PSMLGACRFS  300
EAGLNKLISP LRRIQFNGTA IASRLTNEPS QGNDHHDIRG TFQASSSDDL VVASCSTKSS  360
FTPLDVVLPV TTEKTFESPK RQRGRDLDVV NLESRSLLDN SFLCLSTFGV REHNGHVSKK  420
SRVDETHHLD DKHFGCLCYK PPQLKDFVIP DENGGRCPSV ENHVRRANSQ VHFSTPPDLA  480
LSISFNSSSP ESMLRNSAMS YKNTPSIIRK RASREAGSGN YSVRNCTPAR MISCTSEADF  540
VNVKQDAHSP FHRPKISVAD KSRERRLECE FDKEWDSAVA RCCTPVSTSA SSGLNFGANM  600
MLTP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	2e-81	MYB family protein