PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028117439.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family RAV
Protein Properties Length: 362aa    MW: 40371.6 Da    PI: 9.6547
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028117439.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.43.5e-1368116155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s++kGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  XP_028117439.1  68 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAAQRFRG 116
                     689***9788.8*********3.....5**********99*************98 PP
2B31017.1e-32202301196
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k+ tpsdv+k++rlv+pk++ae+h    ++ + +++ l ++d  g++W+++++y+++s++yvltkGW++Fvk++ Lk+gD+v F+++  s+ +
  XP_028117439.1 202 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqSETTSKGVLLNFKDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDIVSFYRSTGSDNQ 296
                     89*************************9986677799**************************************************88668888 PP

                     .EEEE CS
              B3  92 lvvkv 96 
                     l++ +
  XP_028117439.1 297 LFIDW 301
                     88877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MDGSCIDEST TSDSLSITLA SASTSILLAT KTKASSPKSL CRVGSGTSAI LDSLEGGAEA  60
ESRKLPSSRF KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAARAYDIA AQRFRGRDAV  120
TNFKPLSENE EQDELESLFL NSHSKSEIVD MLRKHTYNDE LEQSRKNYIG GFINNNGNKK  180
ACCNEKSTTN YKNNVKATEQ LFEKAVTPSD VGKLNRLVIP KQHAEKHFPL QSETTSKGVL  240
LNFKDVAGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKSLK AGDIVSFYRS TGSDNQLFID  300
WKPRNGSNPV VQPVQMVRLF GVNIFKVPIS GGLDSNCGGK RMREMELLAL ECSKKVRVIG  360
AL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-143RAV family protein