PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028117379.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family BBR-BPC
Protein Properties Length: 304aa    MW: 34106.2 Da    PI: 7.8589
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028117379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind323.75.3e-99930427301
       GAGA_bind  27 qlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqqlse. 116
                       m+++aerda+irern+al e++ a+aerdma lqrd+a+aern a+ +rd++l al+++e s++    s ++++ ++ +g+k+i ++qq++  
  XP_028117379.1   9 TYMAIMAERDAAIRERNMALDERRRAFAERDMAMLQRDAAIAERNSAIDDRDKALSALQFRESSMNenniSPDSPENEIGHGAKNIYHHQQMHSi 103
                     469************************************************************99988665666788899999999999886666 PP

       GAGA_bind 117 pqledsavelreeekl...ealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader.................skaek 191
                     +ql+++ ++ re  ++   +++ ++++a + +++k++k+++ ++++k+k  +k k+     ++ ++  ++ ++                     +
  XP_028117379.1 104 HQLDETGYDPREIPTSnpyQSTGVSCEAAKPRKVKQTKETKATSTKKSKSPRKGKR---GLEDFSQVTGDTSNgwknepelggnsddldgDLMVW 195
                     99999888855555440004444455444444444444333333333333333333...333333333322235667899******999877788 PP

       GAGA_bind 192 ksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLk 286
                     k+ +l+ln+v++Dest+P+PvCsCtG+++ CYkWGnGGWqSaCCttt+S+yPLP+++++r+aR++grKmS+++f klL++La+eGydls+p+DLk
  XP_028117379.1 196 KD-NLGLNQVNFDESTMPIPVCSCTGVPQPCYKWGNGGWQSACCTTTMSMYPLPQMSNKRHARVGGRKMSGNVFAKLLNRLADEGYDLSTPLDLK 289
                     76.8******************************************************************************************* PP

       GAGA_bind 287 dhWAkHGtnkfvtir 301
                     dhWAkHGtn++ t++
  XP_028117379.1 290 DHWAKHGTNRYSTLK 304
                     ***********9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MENNLTIKTY MAIMAERDAA IRERNMALDE RRRAFAERDM AMLQRDAAIA ERNSAIDDRD  60
KALSALQFRE SSMNENNISP DSPENEIGHG AKNIYHHQQM HSIHQLDETG YDPREIPTSN  120
PYQSTGVSCE AAKPRKVKQT KETKATSTKK SKSPRKGKRG LEDFSQVTGD TSNGWKNEPE  180
LGGNSDDLDG DLMVWKDNLG LNQVNFDEST MPIPVCSCTG VPQPCYKWGN GGWQSACCTT  240
TMSMYPLPQM SNKRHARVGG RKMSGNVFAK LLNRLADEGY DLSTPLDLKD HWAKHGTNRY  300
STLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.17e-93BBR-BPC family protein