PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028117379.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 304aa MW: 34106.2 Da PI: 7.8589 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 323.7 | 5.3e-99 | 9 | 304 | 27 | 301 |
GAGA_bind 27 qlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqqlse. 116 m+++aerda+irern+al e++ a+aerdma lqrd+a+aern a+ +rd++l al+++e s++ s ++++ ++ +g+k+i ++qq++ XP_028117379.1 9 TYMAIMAERDAAIRERNMALDERRRAFAERDMAMLQRDAAIAERNSAIDDRDKALSALQFRESSMNenniSPDSPENEIGHGAKNIYHHQQMHSi 103 469************************************************************99988665666788899999999999886666 PP GAGA_bind 117 pqledsavelreeekl...ealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader.................skaek 191 +ql+++ ++ re ++ +++ ++++a + +++k++k+++ ++++k+k +k k+ ++ ++ ++ ++ + XP_028117379.1 104 HQLDETGYDPREIPTSnpyQSTGVSCEAAKPRKVKQTKETKATSTKKSKSPRKGKR---GLEDFSQVTGDTSNgwknepelggnsddldgDLMVW 195 99999888855555440004444455444444444444333333333333333333...333333333322235667899******999877788 PP GAGA_bind 192 ksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLk 286 k+ +l+ln+v++Dest+P+PvCsCtG+++ CYkWGnGGWqSaCCttt+S+yPLP+++++r+aR++grKmS+++f klL++La+eGydls+p+DLk XP_028117379.1 196 KD-NLGLNQVNFDESTMPIPVCSCTGVPQPCYKWGNGGWQSACCTTTMSMYPLPQMSNKRHARVGGRKMSGNVFAKLLNRLADEGYDLSTPLDLK 289 76.8******************************************************************************************* PP GAGA_bind 287 dhWAkHGtnkfvtir 301 dhWAkHGtn++ t++ XP_028117379.1 290 DHWAKHGTNRYSTLK 304 ***********9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence |
MENNLTIKTY MAIMAERDAA IRERNMALDE RRRAFAERDM AMLQRDAAIA ERNSAIDDRD 60 KALSALQFRE SSMNENNISP DSPENEIGHG AKNIYHHQQM HSIHQLDETG YDPREIPTSN 120 PYQSTGVSCE AAKPRKVKQT KETKATSTKK SKSPRKGKRG LEDFSQVTGD TSNGWKNEPE 180 LGGNSDDLDG DLMVWKDNLG LNQVNFDEST MPIPVCSCTG VPQPCYKWGN GGWQSACCTT 240 TMSMYPLPQM SNKRHARVGG RKMSGNVFAK LLNRLADEGY DLSTPLDLKD HWAKHGTNRY 300 STLK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 7e-93 | BBR-BPC family protein |