PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028116920.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 300aa MW: 34550.9 Da PI: 8.2363

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028116920.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.1	3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl XP_028116920.1 14 RGPWTAREDALLTKYIQAHGEGNWRSLPKKAGLLRCGKSCRLRWMNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	53.7	4.7e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++Ed+l+++ +++lG++ W++Ia +++ gRt++++k++w+++l XP_028116920.1 67 RGNITPDEDDLIIKMHALLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112 7999****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MGRAPCCSKI GLHRGPWTAR EDALLTKYIQ AHGEGNWRSL PKKAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI TPDEDDLIIK MHALLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKKLRRQG 120 TEPNAHKKLL DSDPNLQEEP KKRRRNSNKK QNKFKSNVLV SEKVKAHNPK PIRIKSSRNF 180 SMSRNCSFDW TPTSSLEGDH RVVLGTEVED VPWSSLQEDG DHDHGNGVSF LIGGDDQDQE 240 QDHDLIYGSE SSDLIKWQSQ LPMFDHTLEK LYEEYLQLLK AKDDDQVHDE FDSFAESLLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	153	KKLRRQGTEPNAHKKLLDSDPNLQEEPKKRRRNSNKKQNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	2e-68	MYB family protein