PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028111366.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 454aa MW: 50793.6 Da PI: 6.1059

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028111366.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.6	4.5e-13	280	325	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h ++Er+RR+r+N++f Lr+++P+ +++Ka+ L Av YIk+L XP_028111366.1 280 NHVQAERQRRERLNNRFYALRSVVPNV-----SRMDKASLLADAVSYIKEL 325 7999********************6.....4**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MAEIISSSSS PLLLFEGATP TIQQRLQFIM QSRSEWWVYA IFWQASEDNN DRILLSWCDG 60 HFRGHDQLKL GFDMKRKKVA RGIQSLVNGG DATDPEWFYM VSVTKSFAHG DDIVGQSFSS 120 GAYVWLTGDH EMQFYDCERA KEAHGHGIQT MVCISISNGV IELGSSEIIE EDRGLLQLTK 180 SLFGSDSEDI TMVSKQPGGH VGEILFPPNR NLSLLDFGVP KESYEERNKK EMTIVTGQSS 240 SESGASDLQG TFYSNSTLMN IRSEKRERKT MISLETPPVN HVQAERQRRE RLNNRFYALR 300 SVVPNVSRMD KASLLADAVS YIKELKAKVE ELEVKHRVES QSHKAKVCIT DLYNNHQSTF 360 SSSPLCSYGI ANIADAEVEV KMLGTEAMIQ VRCVDVNYPC ARLMDTLRGL DFGVIHASAS 420 KVKELILQDV VVTVPNGTAS VESLRTAILS RFQI

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MAEIISSSSS PLLLFEGATP TIQQRLQFIM QSRSEWWVYA IFWQASEDNN DRILLSWCDG  60
HFRGHDQLKL GFDMKRKKVA RGIQSLVNGG DATDPEWFYM VSVTKSFAHG DDIVGQSFSS  120
GAYVWLTGDH EMQFYDCERA KEAHGHGIQT MVCISISNGV IELGSSEIIE EDRGLLQLTK  180
SLFGSDSEDI TMVSKQPGGH VGEILFPPNR NLSLLDFGVP KESYEERNKK EMTIVTGQSS  240
SESGASDLQG TFYSNSTLMN IRSEKRERKT MISLETPPVN HVQAERQRRE RLNNRFYALR  300
SVVPNVSRMD KASLLADAVS YIKELKAKVE ELEVKHRVES QSHKAKVCIT DLYNNHQSTF  360
SSSPLCSYGI ANIADAEVEV KMLGTEAMIQ VRCVDVNYPC ARLMDTLRGL DFGVIHASAS  420
KVKELILQDV VVTVPNGTAS VESLRTAILS RFQI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	286	291	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	3e-65	bHLH family protein